BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0452 (609 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g60100.1 68416.m06711 citrate synthase, mitochondrial, putati... 128 2e-30 At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putati... 124 3e-29 At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putati... 124 3e-29 At1g59650.1 68414.m06709 expressed protein ; supporting cDNA gi|... 30 1.4 At5g53030.2 68418.m06586 expressed protein 29 2.4 At5g53030.1 68418.m06587 expressed protein 29 2.4 At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 28 5.6 At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot... 28 5.6 At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot... 28 5.6 At3g15750.1 68416.m01995 expressed protein 28 5.6 At5g44290.1 68418.m05421 protein kinase family protein contains ... 27 9.7 At3g61570.1 68416.m06896 intracellular protein transport protein... 27 9.7 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 9.7 >At3g60100.1 68416.m06711 citrate synthase, mitochondrial, putative strong similarity to SP|Q43175 Citrate synthase, mitochondrial precursor {Solanum tuberosum}; contains Pfam profile PF00285: Citrate synthase Length = 433 Score = 128 bits (310), Expect = 2e-30 Identities = 58/83 (69%), Positives = 69/83 (83%) Frame = +3 Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434 M+ GGMRG+ GL+WETS+LDADEGIRFRG+SIPECQ+ LP A+ GEEPLPE L WLL+TG Sbjct: 40 MVLGGMRGMTGLLWETSLLDADEGIRFRGMSIPECQKILPSAESGEEPLPESLLWLLLTG 99 Query: 435 DIPTEAQAKALSKEWAARAELPA 503 +PT+ QA ALS E A RA +PA Sbjct: 100 KVPTKEQANALSTELAHRAAVPA 122 Score = 33.9 bits (74), Expect = 0.085 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +2 Query: 509 VTMLNNMPGKLHPMSQFSAAVTALNSESKFAKA 607 V ++ +P HPM+QF++ V AL +S+F KA Sbjct: 120 VPAIDALPSTAHPMTQFASGVMALQVQSEFQKA 152 Score = 27.1 bits (57), Expect = 9.7 Identities = 9/25 (36%), Positives = 20/25 (80%) Frame = +1 Query: 151 NLKSILQEKIPKEQEKIREFRKKHG 225 +LKS +QE IP++Q+++++ + + G Sbjct: 5 DLKSQMQEIIPEQQDRLKKLKSEQG 29 >At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putative strong similarity to SP|P20115 Citrate synthase, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF00285: Citrate synthase Length = 474 Score = 124 bits (300), Expect = 3e-29 Identities = 57/98 (58%), Positives = 73/98 (74%) Frame = +3 Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434 M+ GGMRG+ GL+WETS+LD +EGIRFRGLSIPECQ+ LP A+ G EPLPEGL WLL+TG Sbjct: 75 MVIGGMRGMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGAEPLPEGLLWLLLTG 134 Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIP 548 +P++ Q +ALSK+ A RA +P +V P+ P Sbjct: 135 KVPSKEQVEALSKDLANRAAVPDYVYNAIDALPSTAHP 172 Score = 34.3 bits (75), Expect = 0.064 Identities = 16/61 (26%), Positives = 35/61 (57%) Frame = +1 Query: 52 MALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGST 231 ++ F SR+ Q + + ++ S+ +LKS LQE IP++Q+++++ + +HG Sbjct: 7 VSAFTRLRSRVQGQQSSLSNSVRWIQMQSSTDLDLKSQLQELIPEQQDRLKKLKSEHGKV 66 Query: 232 K 234 + Sbjct: 67 Q 67 Score = 33.1 bits (72), Expect = 0.15 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 518 LNNMPGKLHPMSQFSAAVTALNSESKFAKA 607 ++ +P HPM+QF++ V AL +S+F KA Sbjct: 163 IDALPSTAHPMTQFASGVMALQVQSEFQKA 192 >At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putative strong similarity to SP|P20115 Citrate synthase, mitochondrial precursor {Arabidopsis thaliana}; contains Pfam profile PF00285: Citrate synthase Length = 473 Score = 124 bits (300), Expect = 3e-29 Identities = 57/98 (58%), Positives = 73/98 (74%) Frame = +3 Query: 255 MMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTG 434 M+ GGMRG+ GL+WETS+LD +EGIRFRGLSIPECQ+ LP A+ G EPLPEGL WLL+TG Sbjct: 74 MVIGGMRGMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGAEPLPEGLLWLLLTG 133 Query: 435 DIPTEAQAKALSKEWAARAELPAHV*QC*TICPANCIP 548 +P++ Q +ALSK+ A RA +P +V P+ P Sbjct: 134 KVPSKEQVEALSKDLANRAAVPDYVYNAIDALPSTAHP 171 Score = 33.1 bits (72), Expect = 0.15 Identities = 12/33 (36%), Positives = 24/33 (72%) Frame = +1 Query: 136 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 234 S+ +LKS LQE IP++Q+++++ + +HG + Sbjct: 34 SSTDLDLKSQLQELIPEQQDRLKKLKSEHGKVQ 66 Score = 33.1 bits (72), Expect = 0.15 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 518 LNNMPGKLHPMSQFSAAVTALNSESKFAKA 607 ++ +P HPM+QF++ V AL +S+F KA Sbjct: 162 IDALPSTAHPMTQFASGVMALQVQSEFQKA 191 >At1g59650.1 68414.m06709 expressed protein ; supporting cDNA gi|6520232|dbj|AB028233.1| Length = 492 Score = 29.9 bits (64), Expect = 1.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 525 ICPANCIPCHSSRLPSPHSTVNLNSLKP 608 I P+NC+PC +S +PS +L+S P Sbjct: 157 ILPSNCLPCLNSTVPSIEKRRSLSSSPP 184 >At5g53030.2 68418.m06586 expressed protein Length = 224 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 300 TSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 407 T+VLD +R R LS+P + K +G P PE Sbjct: 98 TTVLDGPYDLRRRSLSLPRSAAVIRKLRGVPAPAPE 133 >At5g53030.1 68418.m06587 expressed protein Length = 245 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 300 TSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 407 T+VLD +R R LS+P + K +G P PE Sbjct: 98 TTVLDGPYDLRRRSLSLPRSAAVIRKLRGVPAPAPE 133 >At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563; metal transport capacity has not been shown, PMID:11500563, PMID:1038174 Length = 1294 Score = 27.9 bits (59), Expect = 5.6 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = -3 Query: 220 ASFGIRGSSLVPWESFPGEYFLNSSVQRLDLEVELSQSDMLSAILRVLKM*S*IEPFLKP 41 A G+ G+S+VP + YF S D++ D L AI V S + L Sbjct: 198 ALMGLLGASIVPHNFYIHSYFAGESTSSSDVDKSSLCQDHLFAIFGVFSGLSLVNYVLMN 257 Query: 40 PSAN-YHT 20 +AN +H+ Sbjct: 258 AAANVFHS 265 >At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein kinase KIPK (KCBP-interacting protein kinase) [Arabidopsis thaliana] gi|7716430|gb|AAF68383 Length = 934 Score = 27.9 bits (59), Expect = 5.6 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +3 Query: 336 RGLSIPECQQQLPKAKGGEE----PLPEGLFWLLVTGDIPTE 449 RGL + E + +L KG E P EGL W L+ IP E Sbjct: 853 RGLLVKEPENRLGSEKGSVEIKRHPFFEGLNWALIRCAIPPE 894 >At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein kinase KIPK (KCBP-interacting protein kinase) [Arabidopsis thaliana] gi|7716430|gb|AAF68383 Length = 934 Score = 27.9 bits (59), Expect = 5.6 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +3 Query: 336 RGLSIPECQQQLPKAKGGEE----PLPEGLFWLLVTGDIPTE 449 RGL + E + +L KG E P EGL W L+ IP E Sbjct: 853 RGLLVKEPENRLGSEKGSVEIKRHPFFEGLNWALIRCAIPPE 894 >At3g15750.1 68416.m01995 expressed protein Length = 186 Score = 27.9 bits (59), Expect = 5.6 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 121 LLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGS 228 L+RG+S+ L L+EK+ +QE +F+K H S Sbjct: 79 LVRGVSSALAFLPDELREKLIDKQETREKFQKLHSS 114 >At5g44290.1 68418.m05421 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 644 Score = 27.1 bits (57), Expect = 9.7 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -2 Query: 521 STLSHVSR*LRPRCPFFRQRFSLRFGGYIASDEK 420 S L++V PR P +R + + GGY+ SD++ Sbjct: 533 SRLTYVKDNAAPRIPSYRANSAGQGGGYVGSDQQ 566 >At3g61570.1 68416.m06896 intracellular protein transport protein USO1-related contains weak similarity to intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae] Length = 712 Score = 27.1 bits (57), Expect = 9.7 Identities = 10/26 (38%), Positives = 20/26 (76%) Frame = -3 Query: 181 ESFPGEYFLNSSVQRLDLEVELSQSD 104 ESFPG+ + S+QRL+++++ +Q + Sbjct: 336 ESFPGKEEMEQSLQRLEMDLKETQRE 361 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 27.1 bits (57), Expect = 9.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 346 DRPRKRIPSSASSTEVSQTRPLIPRMP 266 DR R+R PSS+ S S++ P++ R P Sbjct: 604 DRRRRRSPSSSRSPSRSRSPPVLHRSP 630 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,618,513 Number of Sequences: 28952 Number of extensions: 247593 Number of successful extensions: 857 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1216725696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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