Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0451
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    27   0.19 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 509 YVVMEYCNGGDLADYLQ 559
           Y VMEY NGGDL   +Q
Sbjct: 61  YFVMEYVNGGDLMYQIQ 77


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +1

Query: 247  VKMKLSKSVITSSLNKI*LDMVLLRWSTKEGRERIRPSLLR*RWSQRKASRKRQRY 414
            VK+ L   V T +L  + + +V LRW ++   +R++  +   + +Q+ A  +R+RY
Sbjct: 1611 VKVMLPLIVATVAL-VVAVVIVALRWRSRYLGDRMQRPMKESQENQQNAETQRERY 1665


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +1

Query: 247  VKMKLSKSVITSSLNKI*LDMVLLRWSTKEGRERIRPSLLR*RWSQRKASRKRQRY 414
            VK+ L   V T +L  + + +V LRW ++   +R++  +   + +Q+ A  +R+RY
Sbjct: 1607 VKVMLPLIVATVAL-VVAVVIVALRWRSRYLGDRMQRPMKESQENQQNAETQRERY 1661


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 454  CNTKTWSRCTTAWTAPPMLCCHGVL 528
            C T T      +W +PP+   +GV+
Sbjct: 1090 CTTLTSQTIRISWMSPPLSAANGVI 1114



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 KISENEVIQVGDYEFTKQDIIGH 308
           ++S  E +QVG Y     D++ H
Sbjct: 433 RLSNTERLQVGQYVTVNGDVVSH 455


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 YVVMEYCNGGDLADYLQTNRLLSETTIQLFLA 604
           Y++ME C GG+L   L+      + T + + A
Sbjct: 442 YMLMEACLGGELWTVLRDKGHFDDGTTRFYTA 473


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 502 PMLCCHGVLQWRRPSGLSSNEPAAQRD 582
           P   C G  +W  PSG    +P  Q D
Sbjct: 230 PTFLCKGDGKWYLPSGGCHCKPGYQAD 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,243
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)