Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0450
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   2.2  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   6.8  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   9.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.0  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   9.0  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 510 GFTCPPAPLDAIGNPLNNVINYKYEGNCYYFFS 608
           G T PP P +++ N +N     +     Y++ S
Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYIS 372


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 404 VVLSTWYARRD*HSIQTSAAVTGPTLYLPVMLKNSGFHLP 523
           ++LST +A  D H   T   V     Y+P   KN+GFH P
Sbjct: 110 ILLSTLFADSD-HFSATGFEVLS---YIPKGSKNNGFHKP 145


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 35  LSYIYLALLVAASHVQSTPAAATAQNVICKARNGYYK 145
           L  ++L +++AA      P       V+C  R G+Y+
Sbjct: 152 LDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYR 188


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 351 FEDAILVRAIRCCLGRLDAPSSYTCHFNWITAR 253
           F+  + +    CCL  L   +SYT   +W+ +R
Sbjct: 69  FQSLLSLDIFECCLQILGIATSYTILRSWLLSR 101


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 569 YHIIQRIADSIQRSRGASETQNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHV 390
           YH    ++  IQ    +  T+N       + SA S  + S LN     H +S  R    +
Sbjct: 242 YHTSAGMSSLIQDMINSQRTKNKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPR----I 297

Query: 389 RYWPQ 375
           RY PQ
Sbjct: 298 RYGPQ 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,984
Number of Sequences: 5004
Number of extensions: 62417
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)