BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0450 (630 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.2 SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8 SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 25 9.0 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.0 SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 9.0 >SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces pombe|chr 1|||Manual Length = 802 Score = 27.1 bits (57), Expect = 2.2 Identities = 9/33 (27%), Positives = 16/33 (48%) Frame = +3 Query: 510 GFTCPPAPLDAIGNPLNNVINYKYEGNCYYFFS 608 G T PP P +++ N +N + Y++ S Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYIS 372 >SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual Length = 221 Score = 25.4 bits (53), Expect = 6.8 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 404 VVLSTWYARRD*HSIQTSAAVTGPTLYLPVMLKNSGFHLP 523 ++LST +A D H T V Y+P KN+GFH P Sbjct: 110 ILLSTLFADSD-HFSATGFEVLS---YIPKGSKNNGFHKP 145 >SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E 4F complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/37 (27%), Positives = 18/37 (48%) Frame = +2 Query: 35 LSYIYLALLVAASHVQSTPAAATAQNVICKARNGYYK 145 L ++L +++AA P V+C R G+Y+ Sbjct: 152 LDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYR 188 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/33 (30%), Positives = 17/33 (51%) Frame = -1 Query: 351 FEDAILVRAIRCCLGRLDAPSSYTCHFNWITAR 253 F+ + + CCL L +SYT +W+ +R Sbjct: 69 FQSLLSLDIFECCLQILGIATSYTILRSWLLSR 101 >SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 411 Score = 25.0 bits (52), Expect = 9.0 Identities = 19/65 (29%), Positives = 27/65 (41%) Frame = -2 Query: 569 YHIIQRIADSIQRSRGASETQNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHV 390 YH ++ IQ + T+N + SA S + S LN H +S R + Sbjct: 242 YHTSAGMSSLIQDMINSQRTKNKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPR----I 297 Query: 389 RYWPQ 375 RY PQ Sbjct: 298 RYGPQ 302 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,802,984 Number of Sequences: 5004 Number of extensions: 62417 Number of successful extensions: 151 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 279695522 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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