Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0450
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu...    31   0.83 
At5g49020.2 68418.m06066 protein arginine N-methyltransferase fa...    28   4.4  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   7.8  
At1g50670.1 68414.m05698 OTU-like cysteine protease family prote...    27   7.8  

>At4g19450.1 68417.m02861 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 572

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 35  LSYIYLALLVAASHVQSTPAAATAQNVICKARNGYYKT 148
           L Y +LA LV  SH  +   + T+++V+C  R+ YY T
Sbjct: 494 LIYGFLAALVYDSHGFTGTKSMTSESVVCMGRDCYYLT 531


>At5g49020.2 68418.m06066 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 526

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = +1

Query: 265 PVEVTCVGRGSIQPAQTTPDCPHQYGI-FKHPNASPTNCGQYRTCVGGRAFDMVCPPGLA 441
           P++ TCV  GSI  A+          I F+    S   C  +  C    A     P G  
Sbjct: 70  PLQFTCVSDGSISSAKEKSSFSRGVVIKFRDEKDSKEFCDSFEECKKDDAVKQALPNGTV 129

Query: 442 FNPDFSRCDWADLVPSCDAEKFWVSLAPLL 531
            + + S+ D  D + +  A+ ++     LL
Sbjct: 130 VSANKSKFD--DKIEAASAKMYFHYYGQLL 157


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 1610

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = +1

Query: 250  ISCGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTNCGQYRTCVGGRAFDMVCP 429
            ++C Y + V CV + S+     T    H+  +F    AS   C             M CP
Sbjct: 1284 LACNYAMNVACVKKPSVLYRDYTRWHEHKLALFPRLQASSLTCNLCALADSSSPIYM-CP 1342

Query: 430  P 432
            P
Sbjct: 1343 P 1343


>At1g50670.1 68414.m05698 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 208

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 152 ANCDTYIECRDYQATNMICPDGLHFN 229
           + CD Y + R+Y    M+  DGLH++
Sbjct: 97  SRCDLYGQTRNYDERVMLIYDGLHYD 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,934
Number of Sequences: 28952
Number of extensions: 353126
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)