Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0449
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 30 0.26
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 28 1.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.4
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 2.4
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.6
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 5.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.9
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 153 TVTEQPPPYSAAVPPGLQPHTYPQASNPPGA 245
+V+ QPP + V PG Q H Y +S PP +
Sbjct: 314 SVSSQPPLTHSYVHPGPQSHKYSLSSGPPAS 344
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 135 SIMEKPTVTEQPPPYSAAVPPGLQPHTYPQASN--PPGA 245
S+ ++P V PPPY P P T + PPGA
Sbjct: 571 SVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPGA 609
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPP 239
P+VT Q PP S+ +PP T PQ PP
Sbjct: 1048 PSVTPQLPPVSSRLPP--VSATRPQIPQPP 1075
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 180 SAAVPPGLQPHTYPQASNPPGAPFPH 257
++ PP L +Y A P +P+PH
Sbjct: 107 ASPAPPSLSEPSYVMARTPSSSPYPH 132
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +3
Query: 153 TVTEQPPPYSAAVPPGLQPHTYP---QASNPPGAP 248
T QPP Y+A+ P Q T P +S PP P
Sbjct: 210 TPLNQPPSYAASTQPEFQQTTSPIFSSSSTPPPPP 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 162 EQPPPYSAAVPPGLQPHTYPQASNPPGAP 248
E+ P SA PP + P + S+PP +P
Sbjct: 243 ERVPSLSAPAPPPIPPPSNGTVSSPPNSP 271
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAP 248
P + + PP +++PP QP +PP AP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAA--PVKSPPSAP 188
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 516 NSTNIAPQFEHLLFF---KARQHSI-PNGKKRMAHKIPRHVKSSSKMPTRHA 373
NST++A Q EH++F HS+ PN K R + R K P A
Sbjct: 248 NSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRA 299
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 159 TEQPPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
T PPP S PP P + PP AP P
Sbjct: 1706 TPPPPPMSVPPPPSAP----PMPAGPPSAPPP 1733
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 169 PRRILRQSLQGFN--RIHTHRHLIRQVHLFPTTSGL*SIWCSSSTNRLCTKLRSHKH 333
P IL+ S F+ RIH +L +Q+ PTTS + + ++S + + + + S +H
Sbjct: 129 PFNILKGSTLRFSQSRIHQKWYLRKQIRFLPTTSFVPVLQYAASKSFVKSMVESTEH 185
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 141 MEKPTVTEQPPPYSAAVPPGLQPHTY-PQASNPPGAPFPH 257
+ KP V+ +P +A PP P + SN P A P+
Sbjct: 92 LSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPN 131
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 147 KPTVTEQPPPYSAAVPPGLQPH-TYPQASNPPGAP 248
KP+V P P + PP +P P P GAP
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPG 242
PPP PPG +P + P PPG
Sbjct: 9 PPP--PPPPPGFEPPSQPPPPPPPG 31
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAP 248
PPP A+P P P ++ PP P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGP 1909
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,815
Number of Sequences: 5004
Number of extensions: 55992
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -