Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0449
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 32 0.49
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 29 2.6
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 2.6
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 29 3.4
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 29 4.5
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 4.5
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 4.5
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 4.5
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 28 6.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 28 7.9
SB_34509| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 28 7.9
SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 28 7.9
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 28 7.9
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 MEKPTVTEQP-PPYSAAVPPGLQPHTYPQASNPPGAPFP 254
++ P TEQP PP A PP QP P+ +PP + P
Sbjct: 1017 LKPPGPTEQPVPPKRKASPPSAQPLPPPRKPSPPPSAVP 1055
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAPFPHHLRAIVHMVLLLHKQALYQA 317
PPP PP P P PP P P HL AI L+ QAL +A
Sbjct: 468 PPPPPPPPPPPPPPPPPPPPFPPPPPPTPLHLAAITKQASLV--QALLEA 515
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 144 EKPTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAP 248
E PT PPP PP +P T P ++PP P
Sbjct: 1026 EPPTDPPTPPPTEPPTPPPTEPPT-PPPTDPPTQP 1059
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFPHHLRAIV 275
P PPP A PP QP A PP AP PH L I+
Sbjct: 82 PAAPPPPPPLPAPPPPPAQP-----APQPPPAP-PHFLPFII 117
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
P PP AA P P P A+ PP P P
Sbjct: 58 PAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLP 92
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 135 SIMEKPTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFPHHL 263
S+M + V E PPP +A+ P P P + PP P L
Sbjct: 296 SLMAELGVGEAPPPPAASEPAAFAPAPPPSQAPPPPKTIPSTL 338
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
PPP A PPG P P A PGAP P
Sbjct: 230 PPPQGYAPPPGGYPGA-PPAGGYPGAPPP 257
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +3
Query: 141 MEKPTVTEQPPPYSAAVPPGL--QPH--TYPQASNPPGAPFP 254
M P V PP PPGL QP P PPG PFP
Sbjct: 2612 MMPPMVPMMLPPMLPLPPPGLPMQPEAPVQPPPLPPPGGPFP 2653
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 456 SIPNGKKRMAHKIPRHVKSSSKMPTRHAGQ 367
S P G K H I R ++SS PT H GQ
Sbjct: 989 SHPPGHKGQVHSIHRAQRASSSHPTGHKGQ 1018
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 453 IPN-GKKRMAHKIPRHVKSSSKMPTRHAGQAPTV 355
IP+ G K H IPR ++SS P H GQ ++
Sbjct: 968 IPSPGHKGQVHPIPRAQRASSSHPPGHKGQVHSI 1001
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +1
Query: 331 HYNTTSYNHSRSLPRMSSWHF--RRRFHVPRYF---MCHPFLSVRNTVLPCLKKQKM 486
H+ T +RSLP SW R HVPR + H F V + LPC Q +
Sbjct: 434 HFRTHGPGVTRSLPHTCSWALPAHYRIHVPRRYPLTTVHMFPGVTRS-LPCTCSQAL 489
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAP 248
P+ PPP +PP L P P+ PP P
Sbjct: 550 PSEEPPPPPPGVDIPPPLPPSEDPKPPPPPPEP 582
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
PPP P G P YP PPGA P
Sbjct: 209 PPPMGGPPPMGGPPGGYPPPPPPPGAGDP 237
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 365 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 496
AC +CRV C C ++ + + CC + +CS+C
Sbjct: 233 ACCSCRVVCYSCRVACCS--CRVVCYSCRVACCSCRVHMKCSSC 274
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 PTVTEQPPPYSA-AVPPGLQPHTYPQASNPPGAPFP 254
P PPPY PP P P PP AP+P
Sbjct: 90 PNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYP 125
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHT-YPQASNPPGAPFP 254
P PPP PP P+ YP N P P+P
Sbjct: 199 PNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNPPYP 234
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
P PPP + PP P P PP P+P
Sbjct: 162 PPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYP 196
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
P PPPY P P P PP AP P
Sbjct: 170 PNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNP 204
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
P+ QPPP PP P P + +PP P P
Sbjct: 198 PSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPP 232
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAPFP 254
PPP PP + P P+ PP P P
Sbjct: 124 PPPTGTLPPPPVTPPPGPETPPPPDTPAP 152
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +3
Query: 135 SIMEKPTVTEQPPPYSAAVPPGLQPHTYPQAS-----NPPGAPFP 254
S +E T T+ PP + VPP P P AS +PP + FP
Sbjct: 685 SPLEPVTATQMTPPVAPRVPPP-SPRMQPPASGFLRMHPPASGFP 728
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASNPPGAP 248
PPP P PH PQ PP P
Sbjct: 429 PPPQHTGPPQPRPPHGMPQGGGPPQLP 455
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 150 PTVTEQPPPYSAAVPPGLQPHTYP-QASNPPGAP 248
P PPP + PP P T P Q S PG+P
Sbjct: 692 PPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSP 725
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 331 HYNTTSYNHSRSLPRMSSWHFRRRFHVPRYFMCHPFLSVRNTVLPCL 471
HY+ + H R S + R HVP F HPF CL
Sbjct: 1843 HYHAKAKGHKRFSDSASPMFQQTRGHVPIEFFGHPFQLESTETRHCL 1889
>SB_34509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 135 SIMEKPTVTEQPPPYSAAVPPGLQPHTYPQASNPPG 242
SI+ +PT P SAA P L H YP PPG
Sbjct: 23 SILSRPTYR---PRCSAAPAPCLFSHAYPVIPAPPG 55
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 168 PPPYSAAVPPGLQPHTYPQASN-PPGA-PFPH 257
P P + PP P+ YP N PP A PFP+
Sbjct: 417 PSPANQNGPPNSGPYQYPSQPNAPPNASPFPN 448
>SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 138 IMEKPTVTEQPP---PYSAAVPPGLQPHTYPQASNPPGAP 248
+ +P +T Q P PY+A P G YP PPGAP
Sbjct: 27 LSHQPYMTYQTPSRYPYTAYTPGGASSSPYP----PPGAP 62
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 27.9 bits (59), Expect = 7.9
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 169 PRRILRQSLQGFNRIHTHRH-LIRQVHLFPTTSGL*SIWCSSSTNRLC-TKLRSHKHYNT 342
PRR L +S + NR ++ +V L P + ++ S ST+RL T S +
Sbjct: 597 PRRSLTKSRKNHNRRAPGPSVMVNRVEL-PNSKLSGAVGASGSTSRLIGTSNNSPPDWPL 655
Query: 343 TSYNHSRSLPR--MSSWHFRRRFHVPRYFM 426
N R+ R ++SWH H RYF+
Sbjct: 656 CKDNPHRNTLRDLLASWHLLAAKHKIRYFI 685
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 142 WRNQL*PSNPRRILRQSLQGFNRIHTHRHLIRQVHLF 252
WR + P RRI + S Q F+R TH L HLF
Sbjct: 254 WRRRRQPEQSRRIAKFSRQVFHRT-THWSLKDSTHLF 289
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,679,140
Number of Sequences: 59808
Number of extensions: 443619
Number of successful extensions: 1613
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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