Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0448
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   3.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   7.9  

>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
 Frame = -2

Query: 572 HWTFLPLAKL--RQTGNFMLSRSRCLNLRNTV------ALMTTEWVY--HYLH 444
           H+T++ LA      T +  L+ S+CLN  NTV       +    W+Y  HYL+
Sbjct: 243 HFTWIGLAVFITMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFVWIYMRHYLN 295


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 393 NSDTDTELFFKIDSLKSISDCLAAFRNSIAHCK 295
           +S T+ E    ++ LKSI + L + +  I+HC+
Sbjct: 185 SSLTNPEFSILVERLKSIEENLQSLQERISHCE 217


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 195 CSTDLSYDVRTFGDIDISEDMSFLSICAVLVTNFYNVRY 311
           C+ DL Y        +  +D+    + A  V+NF N+R+
Sbjct: 604 CAEDLEYSNMLDKANECDDDIKIFYVAAFAVSNFSNMRH 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,353
Number of Sequences: 5004
Number of extensions: 55935
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)