Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0448
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.099
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.70 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 554 EVKKS-NVAYARKL-VSKGHSRDHYAIHDSTLPKYICHICGKSF 679
           + KKS +  Y  K+ VS G  + H   H  TLP   CH+CGK+F
Sbjct: 12  QAKKSFSCKYCEKVYVSLGALKMHIRTH--TLPCK-CHLCGKAF 52


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 617 HYAIHDSTLPKYICHICGKSF 679
           H   H    P Y C ICGKSF
Sbjct: 222 HTRTHTGEKP-YTCDICGKSF 241



 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 581 ARKLVSKGHSRDHYAIHDSTLPKYICHICGKSF 679
           ++  +  G    H   H    P Y+C  CGK F
Sbjct: 182 SKTFIQSGQLVIHMRTHTGEKP-YVCKACGKGF 213



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 575 AYARKLVSKGHSRDHYAIHDSTLPKYICHICGKSF 679
           A+ +K + + H R H    +     Y C+ICGK+F
Sbjct: 70  AFDQKNLYQSHLRSHGKEGEDP---YRCNICGKTF 101


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 50  TITITNEHNPENYNNKSSL*NG*N*IHYK 136
           TI   N +N  NYNN  +  N  N  +YK
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYK 350


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 56  TITNEHNPENYNNK 97
           TI N +N  NYNNK
Sbjct: 311 TIHNNNNYNNYNNK 324


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 256  ISSLMSMSPNVLTSYDRSVEQ 194
            I S + +SP  L SYD  ++Q
Sbjct: 1243 IGSQIMVSPETLLSYDEKMDQ 1263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,230
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)