Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0448
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    29   2.3  
At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase f...    28   5.2  
At1g53550.1 68414.m06076 F-box family protein similar to F-box f...    27   9.1  

>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 377 QNCFSKLIHSRVFRIV*LPFEIVSHIVKVCNKHCTNT*ETHIFADVDVSKCSHI 216
           +NCFSK  H   F+      E+V   V +    C +  +  I   VDV +  H+
Sbjct: 790 ENCFSK--HGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHM 841


>At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase
           family protein
          Length = 356

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 437 ENNANNDRPTQWSSVQQYFLDLSNVISIT*SYLFVS 544
           EN  ++D P  + S  Q FLD+  ++S+  S+ F+S
Sbjct: 187 ENLPSSDTPAVYVSNHQSFLDIYTLLSLGKSFKFIS 222


>At1g53550.1 68414.m06076 F-box family protein similar to F-box
           family protein TIGR_Ath1:At3g23960
          Length = 408

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 658 TNVFRQSRVVDSIVISTMSFANQL-SCICDIGLFYLWL 548
           T++ +   ++ ++  S + +  +L +CICD  LF LW+
Sbjct: 270 TSIDKDMTIMTNLSFSLIDYKGKLGACICDHTLFELWV 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,946
Number of Sequences: 28952
Number of extensions: 273677
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)