Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0446
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.6  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   3.4  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    27   3.4  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.9  

>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 635 DYCFWCILICFGVFFFLSRFLSEHVCIYNYSCLSFPSF 522
           DYCF   L+   V    S     + C++N+SC SFP +
Sbjct: 112 DYCF---LLSTPVECSASTNSHSYDCLWNFSCNSFPEY 146


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 379 HFVEDPLLLEGEGGRGVDCLHQLVVAEL 296
           H  +DP ++ G+G  G++ LHQ+ + +L
Sbjct: 237 HPFDDPYVIAGQGTIGLEILHQIDLRKL 264


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
 Frame = +2

Query: 272 LELRLPQPQLSNYQLMQTVNAATTLALEEK---RILDEMSRVNRDNEI---VQTLSGCSR 433
           LE++  + Q+   + +  +N  + L L      ++L E   V   NE+     T S C +
Sbjct: 53  LEVQKKKDQIRELERIYEMNPKSFLTLRRTPALKLLPETLSVELSNEVNLTSSTTSSCVK 112

Query: 434 PERSLALVSLLIYKLFF*TXXXXXXXXXXXXXXNLGTNNCKYRHVLTKTDLEKKILQNKL 613
           P   L   +L     F  +              N GTNNC   H  +  D +  ++  KL
Sbjct: 113 PSPYLTNCNLKNKDTFPVSKNNCSLSSGIFTNSN-GTNNCFSTHPKSLDDAKDNVVPKKL 171


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 623 WCILICFGVFFFLSRFLSEHVCIYNYSCLSFPSFYLSVPLSLFL 492
           + I++  GVF FL  + S    +Y +    F S+Y+ +P+ L L
Sbjct: 433 YIIILLNGVFLFLQGYKS----LYPFRLSLFVSYYMEIPIVLGL 472


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 680 RQIDE*LNITPTDFDDYCFWC 618
           R+I + LN+T   F DYC  C
Sbjct: 352 RKIAQELNLTFDGFQDYCLMC 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,830
Number of Sequences: 5004
Number of extensions: 39519
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)