Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0446
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906...    31   0.88 
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    30   1.5  
03_05_0865 - 28365430-28367640                                         29   4.7  
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150...    28   6.2  
05_05_0374 + 24482085-24482418,24483294-24483571                       28   8.2  

>02_04_0585 -
           24088344-24089366,24089833-24090075,24090305-24090655,
           24090736-24090823,24091178-24091275,24091813-24092025,
           24092150-24092245,24093124-24093195,24093909-24094067
          Length = 780

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 340 HPRPRGEEDPRRNVTRQQRQRDSSNSERMLPTGA 441
           H R +   DP RN+T     + S N+ R+LP G+
Sbjct: 520 HSRSKPRADPVRNLTPSLANKPSPNNSRLLPQGS 553


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 325 SQRRDHPRPRGEEDPRRNVTRQQRQRDSSN-SERMLPTGAESG 450
           S++  H R + + D RR   R++R R S   S+RML + +E+G
Sbjct: 279 SKKDKHKRGKRKRDRRRERKRRKRDRKSKQKSKRMLESDSETG 321


>03_05_0865 - 28365430-28367640
          Length = 736

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 325 SQRRDHPRPRGEEDPRRNVTRQQRQRDSSNSER 423
           S RRD  R RG+ D  R+  R  R R+  + E+
Sbjct: 115 SSRRDRDRERGDRDRDRDRERGDRDRERGDREK 147


>01_06_0005 -
           25514039-25514137,25514508-25514570,25514937-25515047,
           25515843-25516103,25516293-25516338,25516504-25516904
          Length = 326

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 575 LSEHVCIYNYSCLSFPSFYLSV 510
           +S+ + +Y  SCLSFP  Y +V
Sbjct: 214 MSKRLLVYEESCLSFPGIYANV 235


>05_05_0374 + 24482085-24482418,24483294-24483571
          Length = 203

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 280 ELQPAVGQG*AVPRWRFRASSPSFKVFKASLSKG 179
           E++ AVG G A PRWR      +F  F  S+  G
Sbjct: 8   EVRQAVGDG-AAPRWRMSLLENTFSSFLQSIGGG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,422
Number of Sequences: 37544
Number of extensions: 257579
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)