Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0446
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 44 2e-04
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 37 0.014
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 34 0.096
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1) 29 3.6
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0) 29 3.6
SB_25822| Best HMM Match : GspK (HMM E-Value=0.61) 29 4.8
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8) 28 6.3
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 6.3
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVDNN-LGGLMVWSIDTDDFRG-HCG 122
I +DDP ++ K+ V N L G+M W+ID DDF G HCG
Sbjct: 320 IGFDDPNSLVYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCG 360
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVDNN-LGGLMVWSIDTDDFRG-HCG 122
+ +D+P+++ K+ V N L G+M W+ID DDF G HCG
Sbjct: 717 VGFDNPKSLIYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCG 757
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDDFRGHCG 122
+ YDD ++ KV + +L G M W++D DDF+G CG
Sbjct: 325 VGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDDFKGDCG 363
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDDFRGHCG 122
I+YDD ++ KV+ NL G M W+ID DDF CG
Sbjct: 700 IAYDDVTSLGRKVELIKKENLLGAMFWAIDLDDFGNVCG 738
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVD-NNLGGLMVWSIDTDDFRG-HCG 122
+ YDD R++ KV+ + L G M W++D DDF G CG
Sbjct: 63 VGYDDERSLQLKVEEVIKAKGLAGAMFWALDLDDFDGSSCG 103
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 ISYDDPRAIAAKVKFAVD-NNLGGLMVWSIDTDDFRGH-CG 122
+ YDD +++ KV+ + + G M W+I DDF+G CG
Sbjct: 441 VGYDDEYSLSLKVERVIKAKGMAGAMFWAIPLDDFKGQFCG 481
>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*KP*NWATRP 228
V W+ + + SE T + TT P + T W+T+P + W T P
Sbjct: 635 VQWTTLPVMSDSEYTVQWTTPPVMSDSEYTVQWTTLPVMSDSEYTVQWTTLP 686
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*KP*NWATRP 228
V W+ + + SE T + TT P + T W+T+P + W T P
Sbjct: 575 VQWTTLPVMSDSEYTVQWTTLPVMSDSEYTLQWTTLPVMSDSEYTVQWTTLP 626
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*KP*NWATRP 228
V W+ + + SE T + TT P + T W+T+P + W T P
Sbjct: 590 VQWTTLPVMSDSEYTLQWTTLPVMSDSEYTVQWTTLPVMSDSEYTVQWTTLP 641
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*KP*NWATRP 228
+ W+ + + SE T + TT P + T W+T+P + W T P
Sbjct: 605 LQWTTLPVMSDSEYTVQWTTLPVMSDSEYTVQWTTLPVMSDSEYTVQWTTPP 656
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*KP*NWATRP 228
V W+ + + SE T + TT P + T W+T P + W T P
Sbjct: 620 VQWTTLPVMSDSEYTVQWTTLPVMSDSEYTVQWTTPPVMSDSEYTVQWTTLP 671
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 12 YDDPRAIAAKVKFAVDNNLGGLMVWSIDTDDFRG 113
YDDP ++ K + A +L G+ +W+ D D+ G
Sbjct: 312 YDDPSSLTFKYRIANMLDLKGVAIWNADLLDYSG 345
>SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)
Length = 155
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 349 PRGEEDPRRNVTRQQRQR----DSSNSERMLPTGAESGLG 456
PRG E ++TRQ RQ+ D ++ P GAE+G G
Sbjct: 97 PRGPEQNVDDLTRQNRQQDVNIDKQDNNEDAPVGAENGEG 136
>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1236
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 641 FDDYCFWCILICFGVFFFLSRFLSEHVCIYNYSCLSFPSFYLSVPLSLF 495
F Y ++ I I G FFFL+ F+ V I N++ L L PL F
Sbjct: 750 FPAYFYFVIFIIMGAFFFLNLFIG--VIIDNFNRLKQQVTLLKRPLDQF 796
>SB_25822| Best HMM Match : GspK (HMM E-Value=0.61)
Length = 309
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 97 RTTSEVTAESTTGPSRTSQTATTGWSTIPYLRRL 198
R T +V S GP TS A W+T P +R L
Sbjct: 257 RRTRDVAFSSICGPEYTSFRAVIPWATNPLIRSL 290
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 170 HPVVAVCEVLEGPVVDSAVTS 108
H VA+CE L GP+ D VTS
Sbjct: 1124 HTFVALCENLSGPISDRIVTS 1144
>SB_46957| Best HMM Match : fn3 (HMM E-Value=3.8)
Length = 123
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 73 VSWSGV*TRTTSEVTAESTTGPSRTSQTATTGWSTIPYL 189
V W+ + + SE T + TT P + T W+T+P +
Sbjct: 52 VQWTTLTVMSDSEYTVQWTTLPVMSDSEYTVQWTTLPVM 90
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -1
Query: 662 LNITPTD---FDDYCFWCILICFGVFFFLSRFLSEHVCIYNYSCL 537
L++ P+D F Y F+ I I G FF L+ F+ V I N++ L
Sbjct: 2295 LDLQPSDESNFSGYIFFVIFILIGAFFVLNLFVG--VIIDNFNTL 2337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,961,423
Number of Sequences: 59808
Number of extensions: 298518
Number of successful extensions: 1133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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