Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0446
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.91 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 NYQLMQTVNAATTLALEEKRILDEMSRVNRDNEI 406
           N + +QTV A   + L +   ++ M R+NR N +
Sbjct: 348 NEETLQTVVAMKMMHLPQSNKMNRMHRMNRVNRV 381


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -1

Query: 680 RQIDE*LNITPTDFDDYCFWCILICFGVFFFLSRFLSEHV 561
           + I++   +TP+D D Y      +CF  F  +   +  H+
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -1

Query: 680 RQIDE*LNITPTDFDDYCFWCILICFGVFFFLSRFLSEHV 561
           + I++   +TP+D D Y      +CF  F  +   +  H+
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHI 430


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 103 TSEVTAESTTGPSRTSQTATTGWSTIPYLRRL*K 204
           T   T  +    S  +   TTG +TIP  RRL K
Sbjct: 236 TGPATPSAVVATSNATAAMTTGTTTIP-TRRLRK 268


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 680 RQIDE*LNITPTDFDDYCFWCILICFGVF 594
           + I++   +TP+D D Y      +CF  F
Sbjct: 329 KDINKLYGMTPSDIDKYSRIVFPVCFVCF 357


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 633 LLFLVYINLFWSIFFSK 583
           +LF+++I L+W I   K
Sbjct: 372 ILFMLFIILYWPILLFK 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,250
Number of Sequences: 438
Number of extensions: 2679
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)