Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0446
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    35   0.045
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    33   0.14 
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    33   0.18 
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    29   2.2  
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    29   3.0  
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    29   3.9  
At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein si...    28   5.2  
At3g23620.1 68416.m02971 brix domain-containing protein contains...    28   5.2  
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ...    28   5.2  
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    28   6.8  
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    27   9.0  

>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   VISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDD 104
           +I YDD +++ AKVK+A    L G   W +  DD
Sbjct: 305 LIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADD 338


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDD 104
           I YDD ++I  KVK+A    L G   W I  DD
Sbjct: 320 IGYDDNQSIVMKVKYAKQRGLLGYFSWHIGADD 352


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDDFRG 113
           I YDD ++I  KV++A    L G   W +  DD  G
Sbjct: 322 IGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSG 357


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +2

Query: 296 QLSNYQLMQTVNAATTLALEEKRILDEM-------SRVNRDNEIVQTLSGCSRPERSLAL 454
           QLSN  L Q  ++A T ++EE++ L E         RV  DN +  T   C  PE S  +
Sbjct: 235 QLSNIPLKQDKSSAETDSIEERKGLQEFYEEMPISKRVADDNSVSVTARKC--PETSKNI 292

Query: 455 VSL 463
           VS+
Sbjct: 293 VSI 295


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTD 101
           I YDD ++I  KVK+A    L G   W +  D
Sbjct: 321 IGYDDNQSIVYKVKYAKFTGLLGYFSWHVGAD 352


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTD 101
           I YDD ++I +KV++A    L G   W +  D
Sbjct: 311 IGYDDNQSIVSKVRYAKLKGLLGYFSWHVGAD 342


>At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase BG1 GI:15081596 from
           [Vitis vinifera]
          Length = 845

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 126 DDRTFKDFTDRYNRMVNDPLLKEAL 200
           D++ FK+ T+RY RM+ D + +E L
Sbjct: 157 DNKQFKEHTERYVRMILDKMKEERL 181


>At3g23620.1 68416.m02971 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 314

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 144 DFTDRYNRMVNDPLLKEALKTLK 212
           D   R NR+ ND L+KEA++T K
Sbjct: 226 DLVIRRNRLPNDSLMKEAMRTSK 248


>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 477

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 557 YRHVLTKTDLEKKILQNKLIYTKNNNHRNR 646
           Y H+L + DL +   ++ L+Y K   HR+R
Sbjct: 265 YTHLLPRLDLSQNQRRHSLLYFKGAKHRHR 294


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDD 104
           I YD  ++I  KV +A    L G   W +  DD
Sbjct: 300 IGYDSEKSIVTKVIYAKQKGLLGYFSWHVGGDD 332


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 6   ISYDDPRAIAAKVKFAVDNNLGGLMVWSIDTDD 104
           I YD   +I  KV +A    L G   W +  DD
Sbjct: 213 IGYDSEESIVTKVIYAKQKGLLGYFSWQVGGDD 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,101
Number of Sequences: 28952
Number of extensions: 205651
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)