Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0445
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    82   6e-17
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   4.0  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    26   5.3  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    26   5.3  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   7.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   9.3  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   9.3  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.3  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 41/84 (48%), Positives = 53/84 (63%)
 Frame = +3

Query: 255 GTNTQSMLDDPLYIGLRQRRVRGPDYDELLDEFMRAVVRRYGQNCLVQFEDFGNANAFRL 434
           GTN ++   +  Y+GLR+ RVRG  YD  LD  ++A+ R       + FEDFG ANA R+
Sbjct: 200 GTNNETHRKNHQYMGLRKDRVRGEQYDSFLDNVIKAI-REVFPEAFIHFEDFGLANAKRI 258

Query: 435 LEKYRNKYCTFNDDIQGTAAVAVA 506
           L+ YR     FNDDIQGT AVA+A
Sbjct: 259 LDHYRPDIACFNDDIQGTGAVALA 282



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   QKFGLVYRRPRGLFITI--HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLGACGM 171
           ++F  +YR P G ++ I  +D  ++   L  + ++D V  I++TD E ILG+GD G  G+
Sbjct: 112 KQFSDIYRYPEGCYLDIDHNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQGVGGV 171

Query: 172 GIPVGKLALYTALGGIKPHQCLPITIDV 255
            I V K  L T   G+ P++ LPI +DV
Sbjct: 172 LISVAKGHLMTLCAGLDPNRFLPIVLDV 199


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 28  PRGLFITIHDKGHVYDVLKNWPETDVRA 111
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +3

Query: 444 YRNKYCTFNDDIQGTAAVAVAGYSPVSDSHRRGCPTTSSSSREP 575
           Y   Y T  D + G  A+   GY       R GCP   +  R P
Sbjct: 266 YGGAYVTTRDSLIGVVAI---GYGDGFPQVRNGCPVIINGKRVP 306


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 396 QFEDFGNANAFRLLEKYRNKYCTFNDDIQGTAAVAVA 506
           + EDF ++ A +LLEK++ +  + ++ +   AAV V+
Sbjct: 114 KLEDFSSSVANQLLEKHKAEMNSSDEGVAAEAAVRVS 150


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 183 HRDAHPACAQVAQTQNTFSVGYNNGADVRLRPVLKNIVYMSLIVDRDEEA 34
           H D +P   + A+  +   + YN   DV+LR    +  +  L   R EEA
Sbjct: 37  HPDKNPNDPKAAEKFHMLQLAYNALIDVQLRKAYDSERFAKLARKRREEA 86


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 411 GNANAFRLLEKYRNKYCTFNDDIQGTAAVAVAGYSPVSDSHRRGCPTTSSSSR 569
           GNA +   L K    +  +      +A +A    SP+S S     P+ S+++R
Sbjct: 86  GNAESAEPLSKRSPPFLAYTPKRAVSATLATTQSSPISTSFNPQLPSNSNTNR 138


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -1

Query: 404 LELHETVL-PVAAHDGAHELVEQLVVVGAAHAPLPEPDVQRVVQHRLGVRTTSIVMGRH* 228
           +E+H ++L     ++G  +L   L +   AH+PL    +   V     +     +   H 
Sbjct: 172 IEVHYSMLFREIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIEN---LKKHHQ 228

Query: 227 CGLMPPSAV*SASLP 183
           C   PPS+  S++LP
Sbjct: 229 CNEQPPSSTFSSTLP 243


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 252 VDSDGQTLMRLDASERGVEREFAHRD 175
           V SDG   +RLD   RG+ + F H D
Sbjct: 503 VSSDG---LRLDVPSRGLRKRFRHGD 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,978
Number of Sequences: 5004
Number of extensions: 43913
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)