Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0445
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 28 5.7
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 28 5.7
SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32) 28 5.7
SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61) 28 5.7
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 28 5.7
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 28 5.7
SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20) 28 5.7
SB_24579| Best HMM Match : rve (HMM E-Value=0.085) 28 5.7
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.5
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.5
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0) 27 9.9
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 27 9.9
SB_55656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 149 bits (361), Expect = 2e-36
Identities = 62/85 (72%), Positives = 75/85 (88%)
Frame = +1
Query: 1 QKFGLVYRRPRGLFITIHDKGHVYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIP 180
+K+G+++RRPRGLFI+IHDKGH+ D++ NWP T+V+AIV+TDGERILGLGDLG CGMGIP
Sbjct: 158 RKYGMIFRRPRGLFISIHDKGHIRDIVSNWPTTEVKAIVMTDGERILGLGDLGCCGMGIP 217
Query: 181 VGKLALYTALGGIKPHQCLPITIDV 255
VGKLALYT GGI P CLP+ IDV
Sbjct: 218 VGKLALYTVCGGIDPEGCLPVMIDV 242
Score = 137 bits (332), Expect = 6e-33
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 255 GTNTQSMLDDPLYIGLRQRRVRGPDYDELLDEFMRAVVRRYGQNCLVQFEDFGNANAFRL 434
GTN + +LDDP YIG+RQ+R DYDEL+DEF++A ++R+G L+QFEDFGN NAFR
Sbjct: 243 GTNNEELLDDPFYIGVRQKRCNTEDYDELIDEFIQAALQRFGPTTLIQFEDFGNHNAFRF 302
Query: 435 LEKYRNKYCTFNDDIQGTAAVAVAG 509
LEKYRNK CTFNDDIQGTAAVAVAG
Sbjct: 303 LEKYRNKICTFNDDIQGTAAVAVAG 327
>SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 435 LEKYRNKYCTFNDDIQGTAAVAVAGYSPVSDSHRRGCPT 551
LEK+ K+C + D+ ++ + GY+ S ++ R CPT
Sbjct: 147 LEKHNQKFCGYFDECLTNSSKKLTGYTERSVANSRNCPT 185
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 1138 PENLRPRKIDQEQLLKREQEYRERYSSNYNSHHR 1171
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 400 PENLRPRKIDQEQLLKREQEYRERYSSDYNSRHR 433
>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
Length = 670
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 620 PENLRPRKIDQEQLLKREQEYRERYSSDYNSRHR 653
>SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
Length = 385
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 395 HETVLPVAAHDGAHELVEQLVVVGAAHAPLPEPDVQRVV 279
HE + PV G HE + +VV H L + RVV
Sbjct: 295 HEWLSPVVVTSGCHEWLSPVVVTSGCHEWLSRVVLSRVV 333
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 791 PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 824
>SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 319
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 395 HETVLPVAAHDGAHELVEQLVVVGAAHAPLPEPDVQRVV 279
HE + PV G HE + +VV H L + RVV
Sbjct: 229 HEWLSPVVVTSGCHEWLSPVVVTSGCHEWLSRVVLSRVV 267
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 395 HETVLPVAAHDGAHELVEQLVVVGAAH 315
HE + PV G HE + Q+VV H
Sbjct: 18 HEWLSPVVVTSGCHEWLSQVVVTSGCH 44
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 407 VLELHETVLPVAAHDGAHELVEQLVVVGAAH 315
++ +H ++L +A HD +H+L+ L V +H
Sbjct: 586 LIHVHFSILHLAVHDVSHDLIHSLSEVAFSH 616
>SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20)
Length = 298
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 156 PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 189
>SB_24579| Best HMM Match : rve (HMM E-Value=0.085)
Length = 318
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 172 PSRMRPSRPDPEYVLRRLQQWRGRPSPASS*EHR 71
P +RP + D E +L+R Q++R R S + HR
Sbjct: 92 PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 125
>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 948
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 112 IVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITIDVVRTPS 270
I+ T G G G+GI + +L A P+ CLP T+ + +PS
Sbjct: 846 IIYTSGLSAKSRGAGSGYGLGIDIEELFGNLASPSKDPNLCLPATLSLPNSPS 898
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 216 ASERGVEREFAHRDAHPACAQVAQTQNTFSVGYNNGADVRLR 91
+ E G + + +D + +Q Q QNT + GY N AD L+
Sbjct: 360 SEESGYAIKVSVQDDNSTDSQTPQAQNTQTQGYQNAADQSLQ 401
>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
Length = 663
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 37 LFITIHDKGHVYDVLKNWPE 96
L IT H+ GH+Y LK W +
Sbjct: 364 LIITHHEMGHIYYFLKYWDQ 383
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +2
Query: 191 SRSTPRSEASSRISVCPSLST 253
SRSTPRS A SRI PS ST
Sbjct: 435 SRSTPRSRAGSRIRT-PSTST 454
>SB_55656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 264 CSYHVDSDGQTLMRLDASERGVEREFAHRDAHP 166
C H D+DG +R A+ERG+ + A R +P
Sbjct: 15 CPSHRDADGAVTVRTAAAERGISVDSA-RSRYP 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,003
Number of Sequences: 59808
Number of extensions: 378837
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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