Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0445
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 130 1e-30
U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical pr... 36 0.032
U23521-9|AAC46809.2| 499|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 1.6
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 29 2.8
AF002196-6|AAB53978.2| 406|Caenorhabditis elegans Hypothetical ... 29 3.7
Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical ... 28 6.5
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 130 bits (313), Expect = 1e-30
Identities = 53/85 (62%), Positives = 71/85 (83%)
Frame = +3
Query: 255 GTNTQSMLDDPLYIGLRQRRVRGPDYDELLDEFMRAVVRRYGQNCLVQFEDFGNANAFRL 434
GT+ +L+DP Y GLR++RVRGP+YD L+D FM+A +R+G++ L+QFEDFGN NA+RL
Sbjct: 234 GTDNSELLNDPFYTGLRRKRVRGPEYDTLVDNFMKAATKRFGRDTLIQFEDFGNQNAYRL 293
Query: 435 LEKYRNKYCTFNDDIQGTAAVAVAG 509
L++Y+ +YC FNDDIQGTAAV VAG
Sbjct: 294 LDRYKGEYCMFNDDIQGTAAVVVAG 318
Score = 124 bits (299), Expect = 5e-29
Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 QKFGLVYRRPRGLFITIHDKG--HVYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMG 174
Q FG +YR P+GL+ITI+D ++ +L NWP +VRAIV+TDGERILGLGDLG G+G
Sbjct: 147 QHFGFIYRNPKGLYITINDNSISKIHQILANWPTENVRAIVITDGERILGLGDLGTYGIG 206
Query: 175 IPVGKLALYTALGGIKPHQCLPITIDV 255
IPVGKLALY AL GI+P CLP+ +DV
Sbjct: 207 IPVGKLALYVALAGIRPEWCLPVILDV 233
>U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical
protein F45F2.10 protein.
Length = 980
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 378 GQNCLVQFEDFGNANAFRLLEKYRNKYCTFNDDIQGTAAVAVAGYSPVSDSHRRGCPTTS 557
G NC V+ D + E +N+ D++ G P+SD R P+TS
Sbjct: 87 GNNCSVRIRDRTEEMRKLMDENAKNRPVRIVDNVHGVPITEFTHIVPISDQERDDGPSTS 146
Query: 558 SS--SREPERP 584
S +REP +P
Sbjct: 147 GSYPNREPAQP 157
>U23521-9|AAC46809.2| 499|Caenorhabditis elegans Hypothetical
protein F41C3.2 protein.
Length = 499
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 410 EVLELHETVLPVAAHDGAHELVEQLVVVGAAHAPLPEPDVQRVVQHRLGVRTTSIV 243
E L +ET+LP + + + + L+ A APLP + + +R GV+TT ++
Sbjct: 72 ESLSRNETILPSSLNFNFSKFEQDLLFSAAYIAPLPSIIILYFLTNRSGVKTTFLI 127
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 273 STGCSYHVDSDGQTLMRLDASERGVEREFAHR-DAHPACAQVAQTQNTFSVGYNNGADVR 97
ST C +D Q + ++S VER+F H D P C A + N F G A V+
Sbjct: 620 STYCPKRIDRVQQQQTQPNSSVNDVERDFVHTLDVFPECCD-AVSLNCFQEGKIGKASVK 678
Query: 96 L 94
+
Sbjct: 679 V 679
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 252 VDSDGQTLMRLDASERGVEREFAHRDAHPACAQVAQTQNTFSVGYNNGADVRLR 91
+D +T+ ++D +R A ++ A A +A+TQN VG N GA R
Sbjct: 558 IDELEETIQQIDEEDR------AEKELRIAEASMAKTQNALEVGENGGAPAERR 605
>AF002196-6|AAB53978.2| 406|Caenorhabditis elegans Hypothetical
protein C09D4.3 protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 577 RGRFGYRGTVRYGHERARAR 636
RG G+RGTVRYG +A R
Sbjct: 248 RGEVGWRGTVRYGSLQAHKR 267
>Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical
protein F17B5.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 80 RTSYTCPLSWIVMKRPLGR 24
R + TCP WI +RP GR
Sbjct: 66 RPTRTCPRDWITFERPQGR 84
>AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical
protein Y41C4A.2 protein.
Length = 521
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 300 LRQRRVRGPDYDEL-LDEFMRAVVRRYGQNCLVQFEDFGNANAFRLLEKYRNKYCTFNDD 476
L RV G EL LD+F+RAVV Q+ + + + NA+ +L Y +
Sbjct: 31 LGDSRVLGKCATELELDDFLRAVVDLDLQSLIDKLQAKDGLNAYTVLCAYARRMLDCQTR 90
Query: 477 IQGTAAVAVAGYSPVSDS 530
+ A V + + D+
Sbjct: 91 LDCVAGVVMEAFQTAQDT 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,297
Number of Sequences: 27780
Number of extensions: 268236
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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