Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0441
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    28   1.2  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   2.9  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    27   3.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 196 NFSFCINDLLSAISKEFDSVC 134
           N S  +N+LL A+ KEF+ +C
Sbjct: 21  NVSSRVNELLEAVKKEFEDIC 41


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 223 ASITYVVWCRTEQHLKEVGIDVIHDSPGVGRNLQDHIAVGGIIFRIDYPVSLVMN 387
           A+I +++W   + H    G  VIH+   +G+     + + GI+  ID   +L++N
Sbjct: 222 AAIAFLIWALVKAH--GAG-PVIHEPTKLGQYEHAWVVINGIVTCIDGFATLIVN 273


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 225 LNYLCCLVSDRATPKRGGDRCDS*FSWSREKPARSHRCRRHYLSNRLSRKFGYESS 392
           L+ +  L S+ A     G + DS +S       R+H  RRH  S ++++     SS
Sbjct: 404 LSVVATLASNSAQAHPMGQQSDSNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSS 459


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 402 NVHKTIHNQTYGIIDSKDNASDSDVILQVSPDSRRIMNHIDPHLF*VLLGPTP 244
           N ++  + +  G  D ++ ASDS V+L++    + + N+  P    V L P P
Sbjct: 278 NENEETYLKESGFHDLEEEASDSKVVLKIKGQDQLLENNFVPSKNQVGLEPLP 330


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 351 DNASDSDVILQVSPD 307
           +NASDS+  L+VSPD
Sbjct: 65  ENASDSETTLEVSPD 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,102
Number of Sequences: 5004
Number of extensions: 59279
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)