Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0441
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 52 5e-07
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 52 6e-07
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 47 1e-05
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 47 2e-05
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 46 4e-05
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 46 4e-05
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 42 5e-04
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 31 1.3
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235... 31 1.3
01_06_1527 - 38006174-38006815,38006920-38007420 30 1.7
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324... 29 5.2
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 52.0 bits (119), Expect = 5e-07
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Frame = +2
Query: 71 NLHIALFSHVTKVLIDKDTK----RAYGVEFL-RDGTQQVVYAKR----EVILAAGAIAS 223
NL + L + VT+++ + + + R GVEF +G QQ + R E+I++AGAI S
Sbjct: 243 NLRVLLHASVTRIIFNTEQEHRKPRTIGVEFKDENGGQQHAFLTRNRDSEIIISAGAIGS 302
Query: 224 PQLLMLSGVGPSNT*KR 274
PQLL+LSG+GP K+
Sbjct: 303 PQLLLLSGIGPRKELKK 319
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 51.6 bits (118), Expect = 6e-07
Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Frame = +2
Query: 32 TAKAFLRPVRLRQNLHIALFSHVTKVLIDKDT----KRAYGVEFLRD-GTQQVVYA---- 184
TA FLR R R L + L++ V+++L AYGV F G Q VY
Sbjct: 218 TAADFLRHARPR-GLTVLLYATVSRILFKSQDGVPYPVAYGVVFSDPLGVQHRVYLRDGD 276
Query: 185 KREVILAAGAIASPQLLMLSGVGP 256
K EVI++AG + SPQLLMLSGVGP
Sbjct: 277 KNEVIVSAGTLGSPQLLMLSGVGP 300
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 256 EQHLKEVGIDVIHDSPGVGRNLQDHIAVGGIIFRIDYPVSLVMNRLVNI 402
+ HL+ GI+VI D P VG+ + D+ + + PV L + ++V I
Sbjct: 301 QAHLEAHGIEVIVDQPMVGQGVADN-PMNSVFIPSPVPVELSLVQVVGI 348
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 14 RGTRCSTAKAFLRPVRLRQNLHIALFSHVTKVLIDKDTKRAYGVEFLRD-GTQQVVY--- 181
R R TA FLR R+ + +F T T AYGV F G + VY
Sbjct: 217 RAGRRHTAADFLRRAHPRR---LTVFLRATGTA----TPVAYGVVFTDPAGVRHHVYLRG 269
Query: 182 -AKREVILAAGAIASPQLLMLSGVGPSNT*KRWG 280
AK EVI+ AG + SPQLLMLSGVGP ++ G
Sbjct: 270 GAKSEVIVTAGTLGSPQLLMLSGVGPRGELEKHG 303
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Frame = +2
Query: 23 RCSTAKAFLRPVRLRQNLHIALFSHVTKVLIDKDTKR---AYGVEFL-RDGTQQVVYAKR 190
R TA LR R + + L + V K+L + R A+GV F +G Y
Sbjct: 212 RRHTAADLLRYART-DGIDVLLRARVAKILFNVRAGRRPVAHGVVFHDSEGQMHRAYLSN 270
Query: 191 ----EVILAAGAIASPQLLMLSGVGPSNT*KRWG 280
E+IL+AGA+ SPQLLMLSGVGP++ + +G
Sbjct: 271 GRGNEIILSAGAMGSPQLLMLSGVGPADHLRSFG 304
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Frame = +2
Query: 71 NLHIALFSHVTKVLIDKDT----KRAYGVEFLRD--GTQQVVYAKR---EVILAAGAIAS 223
NL + L + V +++ + RA GV+F + G Q E+I++AGAI S
Sbjct: 229 NLRVLLHASVNRIVFNSQRGQLKPRATGVQFTDENGGLHQAFLNSNCDSEIIVSAGAIGS 288
Query: 224 PQLLMLSGVGPSN 262
PQLL+LSG+GP N
Sbjct: 289 PQLLLLSGIGPKN 301
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = +2
Query: 182 AKREVILAAGAIASPQLLMLSGVGPSNT*KRWG 280
A+ E+IL+AGA+ SPQLLMLSGVGP++ + +G
Sbjct: 265 ARNEIILSAGALGSPQLLMLSGVGPADHLEEFG 297
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 262 HLKEVGIDVIHDSPGVGRNLQDHIAVGGIIFRIDYPVSLVMNRLVNI 402
HL+E GI ++ D PGVG+ + D+ + I PV L + ++V I
Sbjct: 292 HLEEFGISLVLDHPGVGQGMSDN-PMNAIYVPSPSPVELSLIQVVGI 337
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = +2
Query: 191 EVILAAGAIASPQLLMLSGVGPSN 262
EVIL+AG++ SPQLL+LSG+GP+N
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPAN 324
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 162 ALSKSFMQNEKLYWRLEQ*LRLNYLCCLVSDRATPKRGGD 281
A+ ++ +Q +L W E+ + Y C+ D +TP GD
Sbjct: 322 AVDRAIVQLARLLWEAEKSGKYQYFLCVTGDHSTPVEYGD 361
>01_01_0282 -
2349336-2349583,2349719-2349786,2349880-2349950,
2350022-2350123,2350309-2350449,2350540-2350716,
2352228-2352338
Length = 305
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Frame = +1
Query: 160 WHSASRLCKTRSYIGGWSNS---------FASITYVVWCRTEQHLKEV-GIDVIHDSPGV 309
WH ASR+ + + W + +++I++ + R ++ L+ V G+D + GV
Sbjct: 54 WHEASRIVREEGFGAFWKGNLVTIVHRLPYSAISFYSYERYKKFLQRVPGLDEDSNYVGV 113
Query: 310 GRNLQDHIAVGGIIFRIDYPVSLVMNRLVNINSALRY 420
R L +A G + YP+ +V RL + Y
Sbjct: 114 ARLLSGGLA-GITAASVTYPLDVVRTRLATQKTTRYY 149
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 569 LCTSVRRRRT*CHHKFNVRPTSVAFAYLVLIKATTSRPMLDVSGPSSVMAY 417
L S+RR C +N RPT+ F + A P+L++S S+VM Y
Sbjct: 334 LILSIRRSEVPC--MYNSRPTTACFLFARKFSADALEPLLNIS--STVMQY 380
>05_07_0293 +
29031318-29031812,29032096-29032158,29032365-29032490,
29032783-29032911,29033161-29033311,29033853-29033962,
29034502-29034607,29034697-29034894,29034988-29035030,
29035129-29035207
Length = 499
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 131 RAYGVEFLRDGTQQVVYAKREV 196
RAYGVEFL VYA R+V
Sbjct: 137 RAYGVEFLEGPDGMAVYASRDV 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,464,617
Number of Sequences: 37544
Number of extensions: 389206
Number of successful extensions: 852
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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