Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0441
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)                     29   5.3  
SB_8705| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_13877| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-07)                 28   7.0  

>SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)
          Length = 322

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 160 WHSASRLCKTR-SYIGGWSNSFASITYVVWCRTEQHL 267
           +H  ++LCK R  Y+  WSN F S+  +V C   +HL
Sbjct: 17  FHLFAQLCKDRFEYL--WSNIFLSMASLVLCMQLRHL 51


>SB_8705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 510 WPDIEFMMTSCSTPS-DGGTQVKKAHGLTDEFYNEVFQEVNNKD 638
           WP+IEF+    ST S    T V+    L + +YN +   +  +D
Sbjct: 25  WPEIEFLQPGGSTSSRAAATAVELQFALYESYYNSLAVVLQRRD 68


>SB_13877| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-07)
          Length = 230

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 124 YEKSIRSRIP*RWHSASR--LCKTRSYIGG---WSNSFASITYVVWCRTEQHLKEVGI 282
           Y +++   +P RW S +   LC T S +      S+ + +I Y +W R+    K VGI
Sbjct: 61  YREAMGWSLPMRWLSQTAFFLCCTASLLSLAVLTSDRYLAIAYPIWYRSNVSFKRVGI 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,933,342
Number of Sequences: 59808
Number of extensions: 469374
Number of successful extensions: 1020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)