Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0441
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    75   4e-13
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    75   4e-13
AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.     30   7.7  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 74.5 bits (175), Expect = 4e-13
 Identities = 42/92 (45%), Positives = 57/92 (61%)
 Frame = +2

Query: 5   TIRRGTRCSTAKAFLRPVRLRQNLHIALFSHVTKVLIDKDTKRAYGVEFLRDGTQQVVYA 184
           TI  G R S A A+L P   R NL     + V++VL +    RA GVE++++G     YA
Sbjct: 231 TIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGT--RAVGVEYVKNGQSHRAYA 288

Query: 185 KREVILAAGAIASPQLLMLSGVGPSNT*KRWG 280
            +EVIL+ GAI SPQLLMLSG+G ++  K+ G
Sbjct: 289 SKEVILSGGAINSPQLLMLSGIGNADDLKKLG 320



 Score = 35.5 bits (78), Expect = 0.21
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 265 LKEVGIDVIHDSPGVGRNLQDHIAV 339
           LK++GI V+   PGVG+NLQDH+ +
Sbjct: 316 LKKLGIPVVCHLPGVGQNLQDHLEI 340



 Score = 32.3 bits (70), Expect = 1.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 663 LRPKSRGFIKLRSTNPLDYPIMGPQLL 743
           +R  S G++KLRS NP D+P++ P  L
Sbjct: 427 MRGTSVGWLKLRSANPQDHPVIQPNYL 453


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 74.5 bits (175), Expect = 4e-13
 Identities = 42/92 (45%), Positives = 57/92 (61%)
 Frame = +2

Query: 5   TIRRGTRCSTAKAFLRPVRLRQNLHIALFSHVTKVLIDKDTKRAYGVEFLRDGTQQVVYA 184
           TI  G R S A A+L P   R NL     + V++VL +    RA GVE++++G     YA
Sbjct: 119 TIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGT--RAVGVEYVKNGQSHRAYA 176

Query: 185 KREVILAAGAIASPQLLMLSGVGPSNT*KRWG 280
            +EVIL+ GAI SPQLLMLSG+G ++  K+ G
Sbjct: 177 SKEVILSGGAINSPQLLMLSGIGNADDLKKLG 208



 Score = 35.5 bits (78), Expect = 0.21
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 265 LKEVGIDVIHDSPGVGRNLQDHIAV 339
           LK++GI V+   PGVG+NLQDH+ +
Sbjct: 204 LKKLGIPVVCHLPGVGQNLQDHLEI 228



 Score = 32.3 bits (70), Expect = 1.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 663 LRPKSRGFIKLRSTNPLDYPIMGPQLL 743
           +R  S G++KLRS NP D+P++ P  L
Sbjct: 315 MRGTSVGWLKLRSANPQDHPVIQPNYL 341


>AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.
          Length = 708

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 306 SREKPARSHRCRRHYLSNRLSRKFGYESSCEH*LCFTVCHHRGRS 440
           SR +P +SHR R H   +R        SSCE         HRGRS
Sbjct: 270 SRSRPRKSHRHRHHRCPSRSQSSESRPSSCE-------SRHRGRS 307


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,034,668
Number of Sequences: 237096
Number of extensions: 1982805
Number of successful extensions: 4086
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4082
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)