Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0441
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    70   2e-12
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    31   0.66 
U40412-3|AAV28343.2|  381|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 11/97 (11%)
 Frame = +2

Query: 5   TIRRGTRCSTAKAFLRPVRLRQNLHIALFSHVTKVLIDKDTKRAYGVEFLRD----GTQQ 172
           TI  G R S +KA++ P+R R NL  +     T+VL D  T +A G+EF+R     GT  
Sbjct: 226 TIHNGERWSASKAYVHPIRNRPNLITSSGITCTRVLFD--TNKAIGIEFIRKLNFVGTDS 283

Query: 173 V-------VYAKREVILAAGAIASPQLLMLSGVGPSN 262
           +       +Y + +VILA GAI +PQLLMLSGVGP++
Sbjct: 284 IDSYSREKIYCQGDVILAGGAINTPQLLMLSGVGPAD 320



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 262 HLKEVGIDVIHDSPGVGRNLQDHIAV 339
           HL+   I ++ + PGVG+NLQDH+ +
Sbjct: 321 HLRSHEIPIVANLPGVGQNLQDHLEI 346


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
            protein Y25C1A.5 protein.
          Length = 971

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +1

Query: 166  SASRLCKTRSYIGGWSNSFASITYVVWCRTEQHLKEVGIDVIHDSPGVGRNLQDHIAVGG 345
            S+S+L K    + G+S+   +  YV      Q+   + + +++ +    +N+   +A  G
Sbjct: 718  SSSKLGKVIQ-LAGFSDPIYAEAYV---NVNQYDIVLDVLIVNQTSDTLQNVSLELATVG 773

Query: 346  IIFRIDYP--VSLVMNRLVNINSALRYAITEDGPLTSSIGLEV 468
             +  +D P  V+L  N   NI + ++ A TE+G + S+I  +V
Sbjct: 774  DLKLVDKPTPVTLAPNDFSNIKATVKVASTENGVIFSTISYDV 816


>U40412-3|AAV28343.2|  381|Caenorhabditis elegans Hypothetical
           protein F46G11.2 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 495 KCY*RWPDIEFMMTSCSTPSDGGTQVKKAHGLTDEFYNEVFQEVNNKD 638
           K + R PD    +     PS      KK+ G TD++Y     +++ KD
Sbjct: 316 KRFRRSPDYYDQIDEKKKPSKTSDSSKKSSGNTDDYYGNFDSDIDEKD 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,565
Number of Sequences: 27780
Number of extensions: 340498
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)