Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0440
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   4.3  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   7.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 475 FRNQNKYVLNECKCITNHYTSSSE 404
           F N+N   L+E +C   H+ SSSE
Sbjct: 36  FSNENTNRLSEVQCKLTHFLSSSE 59


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 416 SVMISNALAFI*NVFILISKSNVNKHVSDTFILFSLTYYTRNYK 547
           S+  S+ L  I N   L+ K  +N +   +F ++   YYT  YK
Sbjct: 344 SLKNSSVLKKILNNLALMKKKELNLNFLPSFDVWDREYYTARYK 387


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 476 SNVNKHVSDTFILFSLTYYTRNYKLK*NLHDVK*YIFFCRAILNERKV 619
           SN+++++S+TF   S+ ++   Y  K  L  +       + +LN RKV
Sbjct: 58  SNISRNISNTFFKKSIFFFV--YYCKQALEFISTVFSIIKFLLNRRKV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,369
Number of Sequences: 5004
Number of extensions: 42510
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)