Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0440
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   6.0  

>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 508 KCIRNMFIYITFRNQNKYVLNECKC 434
           K  +N F+Y TF+  +K  +N+ KC
Sbjct: 210 KSFKNTFVYNTFQFPSKLTINQIKC 234


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 496 NMFIYITF-RNQNKYVLNECKCITNHYTSSSERIRGFHT 383
           N ++Y  F +N        C+C+ NH+    +RIR  +T
Sbjct: 286 NPYLYALFNQNYRDGFKMACRCVMNHHPQHQQRIRQAYT 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,078
Number of Sequences: 59808
Number of extensions: 289478
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)