Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0439
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   2.8  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    25   6.5  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   6.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 102 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 254
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 102 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 254
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTS 396


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 373 RSPQARXGPPRRVLLGLVVNRTTPVG--CESVQSNL 474
           ++PQ +  PP   L  + VN+  PVG  C+  + NL
Sbjct: 60  KTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAEDNL 95


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 421 LVVNRTTPVGCESVQSNLRFSFNSHYVTNSIEAKFF 528
           L+ +R TP  CES  SN+R    +H +++     ++
Sbjct: 140 LINSRVTP-NCESNCSNIRRRLTAHIISSDASTAYY 174


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 PPSATSTFSHGQGDEPKATNGTS 242
           PP++TS  S+G G  P+   G+S
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSS 442


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 97  SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 210
           + P  +A  TS+IPN    GP   P  Q AQ A  ++ K
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,469
Number of Sequences: 5004
Number of extensions: 39877
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)