Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0439
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 33 0.24
03_06_0519 - 34481751-34482722 32 0.31
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 1.7
06_03_0604 - 22682421-22682561 29 2.2
01_01_0219 + 1863478-1864041,1864459-1865109 29 2.2
07_03_1136 + 24218601-24218734,24218769-24219906 29 2.9
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 29 2.9
01_02_0108 - 11200964-11201338 29 3.8
10_08_0271 - 16382655-16384451 28 6.7
03_03_0142 + 14800317-14801240 28 6.7
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 27 8.9
10_01_0129 + 1535823-1537196 27 8.9
04_04_0545 + 26141335-26141793,26141883-26141981 27 8.9
04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099 27 8.9
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 27 8.9
01_07_0082 - 40965947-40967023 27 8.9
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 144 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNV 257
+ P+ G A P A STF H Q P ATN +++ NV
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQNV 621
>03_06_0519 - 34481751-34482722
Length = 323
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 91 GCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRK 225
G APP ++ T + RS R GA P H A+ S+T+ S +
Sbjct: 28 GAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 75 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 203
A L +R RPP GG T + + P+ P AT F H
Sbjct: 171 ASLYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>06_03_0604 - 22682421-22682561
Length = 46
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 356 PEQPRAEAPKRVRVPPGGF 412
P +PRA P + R PPGGF
Sbjct: 26 PRRPRAPEPGKARRPPGGF 44
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 193 VLVALGGTARRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPT 56
+L +L ++ RP++ S S VWPPP ST +P PT
Sbjct: 46 MLHSLVPSSSRPIMQPSPSPETPCVWPPPLPSSTPTPAPSPPSTPT 91
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -3
Query: 178 GGTARRPVLGGSGSESKMLVWPPPGGRSTLLDR 80
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGGGGA-LARPPGGGRGGALGR 171
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -3
Query: 181 LGGTARRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPTLNGVEVI 35
LG TAR P S + + +V PPP RST R A + RPT V I
Sbjct: 124 LGRTARSP----SPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPI 168
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 36 MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 194
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
>10_08_0271 - 16382655-16384451
Length = 598
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 78 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPS 182
R +S V R GGG T+ P PP G A P S
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPES 98
>03_03_0142 + 14800317-14801240
Length = 307
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 141 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSV 245
P P R G A P+A +T G E +T GTS+
Sbjct: 198 PPPARKGLSACNPAAATTTPGGAAAESASTAGTSL 232
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 82 YQAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALS 198
Y+A CSA P + T +++ R+ R AV R+LS
Sbjct: 33 YEAACSADPELGTFDTALRRRASRAITAVASGVEVRSLS 71
>10_01_0129 + 1535823-1537196
Length = 457
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 172 TARRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPTLNG 47
+ RR GG G PPGG S L R S RP +G
Sbjct: 5 SGRRLAAGGGGGGGGAPRGSPPGGGSPLNSSRRSSRRPRPSG 46
>04_04_0545 + 26141335-26141793,26141883-26141981
Length = 185
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 63 LNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPS 182
L GA+ SSR PPG G + PP TGRR + S
Sbjct: 14 LLSGAQPSSRRATPPGNGQRS-----RRPPATGRRRLAAS 48
>04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099
Length = 292
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 57 VGLNDGARLSSRVLRPPGGGHTNI--FDSEPEPPRTGRRAVPPSATSTFSHG 206
VGL+DG + SRVL G H+ + + EP +GR V A HG
Sbjct: 169 VGLDDGTVIRSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHG 220
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 135 SEPEPPRTGRRAVPPSATSTFSHGQ--GDEPKATNGTSVATNV 257
S P PP + VPPS T+ + GQ EP+ G + AT+V
Sbjct: 94 SPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEG-ATATDV 135
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 102 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 236
PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 257 PPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,883
Number of Sequences: 37544
Number of extensions: 342009
Number of successful extensions: 1345
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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