Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0439
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   5.2  
SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)              28   6.9  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_31889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 433 RTTPVGCESVQSNLRFSFNSHYVT-NSIEAKFFLRYAS 543
           R+T + C SV     FSFN H+V  +  E+ F +++ S
Sbjct: 85  RSTHIMCCSVDMKAHFSFNLHHVLFSGYESAFLVQFTS 122


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 93  VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 188
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)
          Length = 327

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 611 AKSETHIVLSIFDHNCRILKGQ 546
           A+SETHI     DH  R+L+G+
Sbjct: 18  ARSETHIRCLSLDHKSRVLRGE 39


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 72   GARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 236
            G   ++    PP GG      +   P   G   VP +AT     G    P AT+G
Sbjct: 919  GGNETAPTATPPSGGGNETAPTATPPSGVGNETVP-TATPPSGSGNETAPTATSG 972


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 132  DSEPEPPRTGRRAVPPSATSTF 197
            + EP PPRT  R+ PPS +S +
Sbjct: 2020 EREPLPPRTKMRSRPPSMSSIY 2041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,464
Number of Sequences: 59808
Number of extensions: 329136
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)