Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0439
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s...    30   1.1  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    28   5.6  
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ...    27   7.4  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    27   9.8  
At2g42850.1 68415.m05306 cytochrome P450 family protein similar ...    27   9.8  

>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 332

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 33  KMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 206
           K  +TP+N  +      SS  +  P    T +F S   P  TGR  V P     F SHG
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 46  HHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 207
           HH   +S + LVY +  S APP+   L+SS    S   P  VP  + +   +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275


>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
           similarity to cytochrome c biogenesis protein CcdA
           [Paracoccus pantotrophus] GI:11095328; contains Pfam
           profile PF02683: Cytochrome C biogenesis protein
           transmembrane region
          Length = 354

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 226 AFGSSPC--PWLKVLVALGGTARRPVLGGS 143
           A  +SPC  P L  L+    T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
            similarity to flagelliform silk protein [Nephila
            clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 420  PEENPPGGTLTRLGASARGCSG 355
            P   PPG  L+ +GAS RG SG
Sbjct: 1272 PGAAPPGVDLSNVGASDRGASG 1293


>At2g42850.1 68415.m05306 cytochrome P450 family protein similar to
           taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
           cuspidata}
          Length = 485

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 385 ARXGPPRRVLLGLVVNRTTPVGCESVQSNLRFSFNSHYVT 504
           A+ G   RVL G+V N  + +G ES+   L  +   H+ T
Sbjct: 134 AKQGEKHRVLRGIVANSLSYIGLESLIPKLCDTVKFHHET 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,652
Number of Sequences: 28952
Number of extensions: 238347
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)