Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0438
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 129 2e-30
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 102 3e-22
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 102 3e-22
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 100 1e-21
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 96 2e-20
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 91 8e-19
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 79 4e-15
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 77 2e-14
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 77 2e-14
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 77 2e-14
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 76 2e-14
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 75 5e-14
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 74 1e-13
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 73 2e-13
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 73 3e-13
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 72 4e-13
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 71 7e-13
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 66 3e-11
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 65 4e-11
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 65 4e-11
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 65 4e-11
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 65 6e-11
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 64 8e-11
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 64 1e-10
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 63 2e-10
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 63 2e-10
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 63 2e-10
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 61 9e-10
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 61 9e-10
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 60 1e-09
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 60 1e-09
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 60 1e-09
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 60 2e-09
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 60 2e-09
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 60 2e-09
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 58 9e-09
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 57 1e-08
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 56 3e-08
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 55 6e-08
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 55 6e-08
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 53 2e-07
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 52 3e-07
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 52 3e-07
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 52 6e-07
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 50 2e-06
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 50 2e-06
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 49 3e-06
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 49 4e-06
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 47 2e-05
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 46 3e-05
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 46 4e-05
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 46 4e-05
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 45 7e-05
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 44 9e-05
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 41 8e-04
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 39 0.003
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 39 0.004
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 39 0.004
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 38 0.006
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 38 0.006
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 38 0.006
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 38 0.010
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 38 0.010
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 37 0.017
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 36 0.023
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 36 0.030
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 36 0.040
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 36 0.040
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 35 0.053
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 35 0.053
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 35 0.053
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 35 0.053
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 35 0.053
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 35 0.053
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 35 0.070
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 35 0.070
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 35 0.070
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 35 0.070
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 34 0.092
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 34 0.092
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 34 0.12
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 34 0.12
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 34 0.12
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 34 0.12
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.16
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 33 0.16
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 33 0.21
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.21
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 33 0.21
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 31 0.65
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 31 0.86
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 30 1.5
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 30 1.5
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 30 2.0
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 2.0
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 29 2.6
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 2.6
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 2.6
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 29 2.6
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 29 3.5
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 29 3.5
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 3.5
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 4.6
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 29 4.6
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 4.6
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 29 4.6
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 29 4.6
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 28 6.0
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 8.0
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 8.0
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 8.0
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 28 8.0
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 28 8.0
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 28 8.0
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 28 8.0
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 8.0
At2g37010.1 68415.m04539 ABC transporter family protein contains... 28 8.0
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ... 28 8.0
At4g09760.2 68417.m01603 choline kinase, putative similar to GmC... 23 9.1
At4g09760.1 68417.m01602 choline kinase, putative similar to GmC... 23 9.1
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 129 bits (311), Expect = 2e-30
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKA 687
+KP++KWSDVAG VILP+KFP FTGKR PW+ LL+GPPGTGKSYLAKA
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKA 184
Query: 688 VATEANNSTFFSVSSSDLVSKWLGE 762
VATEA +STFFSVSSSDLVSKW+GE
Sbjct: 185 VATEA-DSTFFSVSSSDLVSKWMGE 208
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 102 bits (244), Expect = 3e-22
Identities = 45/83 (54%), Positives = 58/83 (69%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 693
P++KW + G V++PIK+P F G PWKGILLFGPPGTGK+ LAKAVA
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVA 166
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TE N+TFF++S+S +VSKW G+
Sbjct: 167 TEC-NTTFFNISASSVVSKWRGD 188
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 102 bits (244), Expect = 3e-22
Identities = 45/83 (54%), Positives = 58/83 (69%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 693
P++KW + G V++PIK+P F G PWKGILLFGPPGTGK+ LAKAVA
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVA 157
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TE N+TFF++S+S +VSKW G+
Sbjct: 158 TEC-NTTFFNISASSVVSKWRGD 179
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 100 bits (239), Expect = 1e-21
Identities = 48/90 (53%), Positives = 57/90 (63%)
Frame = +1
Query: 493 RSYCGKKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKS 672
R P V+W DVAG V+LP+ P F G R PWKG+L+FGPPGTGK+
Sbjct: 227 RDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKT 286
Query: 673 YLAKAVATEANNSTFFSVSSSDLVSKWLGE 762
LAKAVATE +TFF+VSS+ L SKW GE
Sbjct: 287 LLAKAVATEC-GTTFFNVSSATLASKWRGE 315
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 96.3 bits (229), Expect = 2e-20
Identities = 48/85 (56%), Positives = 58/85 (68%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKA 687
+ P VKW DVAG VILP K LFTG R P +G+LLFGPPG GK+ LAKA
Sbjct: 209 RSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKA 268
Query: 688 VATEANNSTFFSVSSSDLVSKWLGE 762
VA+E + +TFF+VS+S L SKW+GE
Sbjct: 269 VASE-SQATFFNVSASSLTSKWVGE 292
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 91.1 bits (216), Expect = 8e-19
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKA 687
+ P+V+W D+AG VI P+ P +F G R P KG+LLFGPPGTGK+ + KA
Sbjct: 3 RDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKA 62
Query: 688 VATEANNSTFFSVSSSDLVSKWLGE 762
+A EA +TFF +S+S L SKW+GE
Sbjct: 63 IAGEA-KATFFYISASSLTSKWIGE 86
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
VK+ D+ VILP++ P LFT + P KGILLFGPPGTGK+ LAKA+A
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALA 206
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TEA + F S++ S L SKW G+
Sbjct: 207 TEA-GANFISITGSTLTSKWFGD 228
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 693
+V + D+ V+LP++ P LFTG + P +GILLFGPPGTGK+ LAKA+A
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIA 576
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
EA ++F +VS S + SKW GE
Sbjct: 577 KEA-GASFINVSMSTITSKWFGE 598
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 693
+V + D+ V+LP++ P LFTG + P +GILLFGPPGTGK+ LAKA+A
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIA 571
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
EA ++F +VS S + SKW GE
Sbjct: 572 KEA-GASFINVSMSTITSKWFGE 593
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
VK+ D+ VILP++ P LF + P KGILLFGPPGTGK+ LAKA+A
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALA 407
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TEA + F S++ S L SKW G+
Sbjct: 408 TEA-GANFISITGSTLTSKWFGD 429
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
V +SD+ V+LP++ P LF ++ P KGILLFGPPGTGK+ LAKAVA
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1006
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TEA + F ++S S + SKW GE
Sbjct: 1007 TEA-GANFINISMSSITSKWFGE 1028
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 74.9 bits (176), Expect = 5e-14
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
V + D+ V+LP++ P LF ++ P KGILLFGPPGTGK+ LAKAVA
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1019
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TEA + F ++S S + SKW GE
Sbjct: 1020 TEA-GANFINISMSSITSKWFGE 1041
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
V ++D+ V+LP++ P LF G + P +GILLFGPPGTGK+ +AKA+A
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 697 EANNSTFFSVSSSDLVSKWLGE 762
EA ++F +VS S + SKW GE
Sbjct: 471 EA-GASFINVSMSTITSKWFGE 491
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT-GKRI-PWKGILLFGPPGTGKSYLAKAVA 693
V++ + G VILP+K P LF GK + P KG+LL+GPPGTGK+ LAKA+A
Sbjct: 84 VEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 143
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
E + + F +V S+L+SKW G+
Sbjct: 144 RE-SEAVFINVKVSNLMSKWFGD 165
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT-GKRI-PWKGILLFGPPGTGKSYLAKAVA 693
V++ + G VILP+K P LF GK + P KG+LL+GPPGTGK+ LAKA+A
Sbjct: 81 VEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 140
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
E + + F +V S+L+SKW G+
Sbjct: 141 KE-SGAVFINVRVSNLMSKWFGD 162
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
V + D+ V+LP++ P LF + P KGILLFGPPGTGK+ LAKAVA
Sbjct: 817 VTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVA 876
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
EA ++ F ++S S + SKW GE
Sbjct: 877 KEA-DANFINISMSSITSKWFGE 898
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 71.3 bits (167), Expect = 7e-13
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKA 687
K P+VKW DV G V LP+ LF+ G+LL+GPPGTGK+ LAKA
Sbjct: 651 KVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 710
Query: 688 VATEANNSTFFSVSSSDLVSKWLGE 762
VATE + F SV +L++ ++GE
Sbjct: 711 VATEC-SLNFLSVKGPELINMYIGE 734
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 690
P+V W+D+ G V P++ P F + P KG+L +GPPG GK+ LAKA+
Sbjct: 475 PNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 534
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A E + F SV +L++ W GE
Sbjct: 535 ANEC-QANFISVKGPELLTMWFGE 557
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 697 EANNSTFFSVSSSDLVSKWLGERRS 771
E + FF ++ +++SK GE S
Sbjct: 264 E-TGAFFFCINGPEIMSKLAGESES 287
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYLAK 684
K P + + G + LPIK P LF I KG+LL+GPPGTGK+ LA+
Sbjct: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + TF VS S+LV K++GE
Sbjct: 214 AVA-HHTDCTFIRVSGSELVQKYIGE 238
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYLAK 684
K P + + G + LPIK P LF I KG+LL+GPPGTGK+ LA+
Sbjct: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + TF VS S+LV K++GE
Sbjct: 214 AVA-HHTDCTFIRVSGSELVQKYIGE 238
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 690
P+V W D+ G V P++ P F + P KG+L +GPPG GK+ LAKA+
Sbjct: 475 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 534
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A E + F SV +L++ W GE
Sbjct: 535 ANEC-QANFISVKGPELLTMWFGE 557
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 697 EANNSTFFSVSSSDLVSKWLGERRS 771
E + FF ++ +++SK GE S
Sbjct: 264 E-TGAFFFCINGPEIMSKLAGESES 287
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 690
P+V W D+ G V P++ P F + P KG+L +GPPG GK+ LAKA+
Sbjct: 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 535
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A E + F S+ +L++ W GE
Sbjct: 536 ANEC-QANFISIKGPELLTMWFGE 558
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA
Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
Query: 697 EANNSTFFSVSSSDLVSKWLGERRS 771
E + FF ++ +++SK GE S
Sbjct: 265 E-TGAFFFCINGPEIMSKLAGESES 288
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 64.5 bits (150), Expect = 8e-11
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPGTGKSYLAKAV 690
P VKW DV G ++ PIK P ++ + + G LL+GPPG GK+ +AKA
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A EA + F + ++L++K++GE
Sbjct: 583 ANEA-GANFMHIKGAELLNKYVGE 605
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 526 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVATEA 702
+ D G V+ PI P F + P GIL GPPG GK+ LA A+A EA
Sbjct: 232 FKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEA 291
Query: 703 NNSTFFSVSSSDLVS 747
F+ +S+++++S
Sbjct: 292 -GVPFYKISATEVIS 305
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
+KP V ++DV G V LP+ P F I P KG+L +GPPGTGK+ LA+
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA ++ F V S+LV K++GE
Sbjct: 221 AVANR-TDACFIRVIGSELVQKYVGE 245
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
+KP V ++D+ G V LP+ L+ I P +G+LL+GPPGTGK+ LAK
Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + F V S+ V K+LGE
Sbjct: 208 AVANH-TTAAFIRVVGSEFVQKYLGE 232
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
K P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ LAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + ++TF V S+L+ K+LG+
Sbjct: 241 AVA-NSTSATFLRVVGSELIQKYLGD 265
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
K P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ LAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + ++TF V S+L+ K+LG+
Sbjct: 241 AVA-NSTSATFLRVVGSELIQKYLGD 265
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKA 687
P V W DV G V P K F G R P GIL+FGPPG K+ +A+A
Sbjct: 719 PKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPP-SGILMFGPPGCSKTLMARA 777
Query: 688 VATEANNSTFFSVSSSDLVSKWLGE 762
VA+EA F +V +L SKW+GE
Sbjct: 778 VASEA-KLNFLAVKGPELFSKWVGE 801
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 762
P KG+L+ GPPGTGK+ LA+ A + FFSV+ +++S++LGE
Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFARH-SGVNFFSVNGPEIISQYLGE 461
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 514 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 690
P V W DV G V PIK F I P +GILL GPPG K+ LAKA
Sbjct: 281 PKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAA 340
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A A ++FFS+S ++L S ++GE
Sbjct: 341 ANAA-QASFFSLSCAELFSMYVGE 363
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 484 ET*RSYCGK-KPHVKW---SDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLF 648
ET S C + KW +++ G +I P ++P + W +G+LL+
Sbjct: 3 ETESSVCDNIAGNEKWRAEAEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLY 62
Query: 649 GPPGTGKSYLAKAVATEAN 705
GPPGTGK+ L +AV E +
Sbjct: 63 GPPGTGKTSLVRAVVQECD 81
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 693
++ +S V G + LP+ P LF I P KG+LL+GPPGTGK+ LA+A+A
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 194
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
+ ++ F V SS ++ K++GE
Sbjct: 195 SNI-DANFLKVVSSAIIDKYIGE 216
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 517 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 693
++ +S V G + LP+ P LF I P KG+LL+GPPGTGK+ LA+A+A
Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 194
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
+ ++ F V SS ++ K++GE
Sbjct: 195 SNI-DANFLKVVSSAIIDKYIGE 216
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
V + DVAG V +K P FT G RIP KG+LL GPPGTGK+ LAKA+A
Sbjct: 217 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIA 274
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
EA FFS+S S+ V ++G
Sbjct: 275 GEA-GVPFFSISGSEFVEMFVG 295
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
+KP +SD+ G V LP+ P F I P KG+L +GPPG+GK+ +A+
Sbjct: 198 EKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVAR 257
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
AVA + F V S+LV K++GE
Sbjct: 258 AVANR-TGACFIRVVGSELVQKYIGE 282
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
V + DVAG V +K P FT G +IP KG+LL GPPGTGK+ LAKA+A
Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIP-KGVLLIGPPGTGKTLLAKAIA 281
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
EA FFS+S S+ V ++G
Sbjct: 282 GEA-GVPFFSISGSEFVEMFVG 302
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
+ + D+ G V P+ +P F I P +G+LL GPPGTGK+ +A+A+A
Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALAC 437
Query: 697 EANNS----TFFSVSSSDLVSKWLGE 762
A+ + +F+ +D++SKW+GE
Sbjct: 438 AASKAGQKVSFYMRKGADVLSKWVGE 463
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
+KP ++D+ G ++LP+ F I P KG+LL+GPPGTGK+ +A+
Sbjct: 163 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMAR 222
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
A A + N+TF ++ LV ++G+
Sbjct: 223 ACAAQ-TNATFLKLAGPQLVQMFIGD 247
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 684
+KP ++D+ G ++LP+ F + P KG+LL+GPPGTGK+ +A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 685 AVATEANNSTFFSVSSSDLVSKWLGE 762
A A + N+TF ++ LV ++G+
Sbjct: 224 ACAAQ-TNATFLKLAGPQLVQMFIGD 248
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
+ + DVAG V +K P F+ G +IP KG+LL GPPGTGK+ LAKA+A
Sbjct: 220 ITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIP-KGVLLTGPPGTGKTLLAKAIA 277
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
EA FFS+S S+ + ++G
Sbjct: 278 GEA-GVPFFSLSGSEFIEMFVG 298
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXV-ILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAK 684
K P V + DV G V L + G R+P +G+LL GPPGTGK+ LA+
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVEIVSCLQGSINYKKLGARLP-RGVLLVGPPGTGKTLLAR 385
Query: 685 AVATEANNSTFFSVSSSDLVSKWLG 759
AVA EA FFSVS+S+ V ++G
Sbjct: 386 AVAGEA-GVPFFSVSASEFVELFVG 409
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 54.8 bits (126), Expect = 6e-08
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 693
V + D+ V+LP ++P LF ++ P GILLFGP GTGK+ LAKAVA
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVA 791
Query: 694 TEANNSTFFSVSSSDLVSKWLGE 762
TEA + ++S +S+W E
Sbjct: 792 TEA-GANLINMS----MSRWFSE 809
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
V ++DVAG V +K P +T G +IP KG LL GPPGTGK+ LA+AVA
Sbjct: 259 VSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVA 316
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
EA FFS ++S+ V ++G
Sbjct: 317 GEA-GVPFFSCAASEFVELFVG 337
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
V + DVAG V +K P +T G +IP KG LL GPPGTGK+ LA+AVA
Sbjct: 247 VTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLLARAVA 304
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
EA FFS ++S+ V ++G
Sbjct: 305 GEA-GVPFFSCAASEFVELFVG 325
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 526 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKG-ILLFGPPGTGKSYLAKAVATEA 702
W DV G + LP KFP +F + + +LL+GPPG GK+++ A A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAA-A 901
Query: 703 NNSTFFSVSSSDLVSKWLG 759
+ F SV +L++K++G
Sbjct: 902 CSLRFISVKGPELLNKYIG 920
Score = 34.3 bits (75), Expect = 0.092
Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 FTGKRIPWKG-ILLFGPPGTGKSYLAKAVA 693
F+ +IP G IL++GPPG+GK+ LA+A A
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA 614
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 51.6 bits (118), Expect = 6e-07
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +1
Query: 523 KWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVAT 696
K+SDV G ++ ++ P FT G ++P KG+LL GPPGTGK+ LA+A+A
Sbjct: 225 KFSDVKGVDEAKAELEE-IVHYLRDPKRFTRLGGKLP-KGVLLVGPPGTGKTMLARAIAG 282
Query: 697 EANNSTFFSVSSSDLVSKWLG 759
EA FFS S S+ ++G
Sbjct: 283 EA-GVPFFSCSGSEFEEMFVG 302
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +1
Query: 613 GKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLG 759
G +IP GILL GPPG GK+ LAKAVA EA FFS+S+S V ++G
Sbjct: 439 GVKIPG-GILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFVEIYVG 485
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +1
Query: 586 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLG 759
P K+ L G +IP KG LL GPPGTGK+ LAKA A E + F S+S SD + ++G
Sbjct: 344 PKKYEDL--GAKIP-KGALLVGPPGTGKTLLAKATAGE-SGVPFLSISGSDFMEMFVG 397
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLG 759
KG+LL GPPGTGK+ LAKA+A EA FF+ + +D V ++G
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEA-GLPFFAANGTDFVEMFVG 391
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +1
Query: 586 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLG 759
P K+ L G +IP KG LL GPPGTGK+ LAKA A E + F S+S SD + ++G
Sbjct: 349 PKKYEDL--GAKIP-KGALLVGPPGTGKTLLAKATAGE-SAVPFLSISGSDFMEMFVG 402
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 46.8 bits (106), Expect = 2e-05
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 696
VK++DVAG V +K P LF I P G+LL GPPG GK+ +AKA+A
Sbjct: 427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 485
Query: 697 EANNSTFFSVSSSDLVSKWLG 759
EA F+ ++ S+ V +G
Sbjct: 486 EA-GVPFYQMAGSEFVEVLVG 505
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 526 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKA----V 690
W VAG V++P+ +P F + P +GILL G PGTGK+ + +A +
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRALIGSL 777
Query: 691 ATEANNSTFFSVSSSDLVSKWLGE 762
A +F+ +D + K++G+
Sbjct: 778 ARGNRRIAYFARKGADCLGKYVGD 801
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 577 VILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 732
V+ +K P FT G ++P KGILL G PGTGK+ LAKA+A EA F+ S
Sbjct: 377 VVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 429
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +1
Query: 586 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLG 759
P K+ L G R P +G+LL G PGTGK+ LAKAVA EA F S S+S+ V ++G
Sbjct: 347 PEKYVRL--GARPP-RGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVG 400
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 44.8 bits (101), Expect = 7e-05
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 693
+ ++DVAG V +K P + G R P +G+LL G PGTGK+ LAKAVA
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPP-RGVLLVGLPGTGKTLLAKAVA 383
Query: 694 TEANNSTFFSVSSSDLVSKWLG 759
E ++ F S S+S+ V ++G
Sbjct: 384 GE-SDVPFISCSASEFVELYVG 404
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 762
KG+LLFGPPGTGK+ +A+ + N V+ +++SK++GE
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGE 294
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGK 618
+KP+VKW+ VAG VILP+ FP FTGK
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTGK 122
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 625 PWK-GILLFGPPGTGKSYLAKAVA 693
PWK G LLFGPPGTGKS + A+A
Sbjct: 226 PWKRGYLLFGPPGTGKSTMISAIA 249
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 625 PWK-GILLFGPPGTGKSYLAKAVA 693
PWK G LLFGPPGTGKS + A+A
Sbjct: 241 PWKRGYLLFGPPGTGKSTMIAAIA 264
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 508 KKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI 624
+KP+VKW+ VAG VILP+ FP FT + I
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAI 124
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEANNSTF 717
WK G LL+GPPGTGKS L A+A N S +
Sbjct: 30 WKRGYLLYGPPGTGKSSLVAAIANFMNYSIY 60
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVS 747
WK G LL+GPPGTGKS L A+A N F + DL S
Sbjct: 246 WKRGYLLYGPPGTGKSSLIAAIANHLN----FDIYDLDLTS 282
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 625 PWK-GILLFGPPGTGKSYLAKAVA 693
PWK G LLFGPPGTGKS + A+A
Sbjct: 237 PWKRGYLLFGPPGTGKSTMISAMA 260
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 625 PWK-GILLFGPPGTGKSYLAKAVA 693
PWK G LL+GPPGTGK+ L A+A
Sbjct: 243 PWKRGYLLYGPPGTGKTSLVAAIA 266
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 598 PHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEAN---NSTF-----FSVSSSDLVSKW 753
P+L + RI ILL GPPGTGK+ L KA+A + + NS + V++ L SKW
Sbjct: 196 PNLVSWNRI----ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKW 251
Query: 754 LGE 762
E
Sbjct: 252 FSE 254
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEAN 705
WK G LL+GPPGTGKS L A+A N
Sbjct: 298 WKRGYLLYGPPGTGKSSLIAAMANHLN 324
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEANNSTF 717
WK G LL+GPPGTGKS + A+A N S +
Sbjct: 235 WKRGYLLYGPPGTGKSTMIAAMANLLNYSIY 265
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEANNSTF 717
WK G LL GPPGTGKS + A+A N S +
Sbjct: 235 WKRGYLLHGPPGTGKSTMIAAMANHLNYSIY 265
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVATEANNSTF 717
WK G LL+GPPGTGKS + A+A N + +
Sbjct: 240 WKRGYLLYGPPGTGKSTMISAMANLLNYNIY 270
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Frame = +1
Query: 520 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT----GKRIPW-----KGILLFGPPGTGKS 672
+ W ++AG +++ + P ++ G R + + +L GPPGTGK+
Sbjct: 316 ISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPPGTGKT 375
Query: 673 YLAKAVATEANNSTFFSVSSSDLVSKWLGE 762
A+ +A +A + V ++SK+ GE
Sbjct: 376 SCARVIANQAGIPLLY-VPLEAVMSKYYGE 404
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LLFGPPGTGKS + A+A
Sbjct: 242 WKRGYLLFGPPGTGKSTMIAAMA 264
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 252 WKRGYLLYGPPGTGKSSLVAAMA 274
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 252 WKRGYLLYGPPGTGKSSLVAAMA 274
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 244 WKRGYLLYGPPGTGKSSLVAAMA 266
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LLFGPPGTGKS + A+A
Sbjct: 239 WKRGYLLFGPPGTGKSTMIAAMA 261
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS + A+A
Sbjct: 238 WKRGYLLYGPPGTGKSSMVAAIA 260
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEANNSTF-FSVSSSDLVSKWLGERRSW 774
K I L GPPG GK+ + +++A N F FSV V++ G RR++
Sbjct: 458 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTY 506
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 237 WKRGYLLYGPPGTGKSSLIAAMA 259
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 242 WKRGYLLYGPPGTGKSSLIAAMA 264
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS L A+A
Sbjct: 243 WKRGYLLYGPPGTGKSSLIAAMA 265
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 616 KRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFF 720
K++ K +LL GPPGTGK+ LA ++ E + F
Sbjct: 62 KKMAGKALLLAGPPGTGKTALALGISQELGSKVPF 96
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 34.3 bits (75), Expect = 0.092
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEA 702
+G+LL GPPGTGK+ A+ +A E+
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKES 550
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS + A+A
Sbjct: 236 WKRGYLLYGPPGTGKSSMIAAMA 258
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS + A+A
Sbjct: 236 WKRGYLLYGPPGTGKSSMIAAMA 258
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK G LL+GPPGTGKS + A+A
Sbjct: 235 WKRGYLLYGPPGTGKSTMIAAMA 257
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 613 GKRIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL-VSKWLGE 762
G R P +G+L+ G GTGK+ LA A+A EA +V + +L W+G+
Sbjct: 453 GARAP-RGVLIVGERGTGKTSLALAIAAEA-RVPVVNVEAQELEAGLWVGQ 501
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEA 702
P++ ILL GPPGTGK+ A+ +A ++
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKS 421
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1
Query: 619 RIPWKGILLFGPPGTGKSYLAKAVATEA 702
+ P++ ++ +GPPGTGK+ +A+ +A ++
Sbjct: 382 KAPFRNMMFYGPPGTGKTMVAREIARKS 409
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVA 693
P++ IL +GPPGTGK+ A+ +A
Sbjct: 397 PFRNILFYGPPGTGKTMAARELA 419
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEA 702
P++ ++ +GPPGTGK+ +A+ +A ++
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKS 394
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 756
+LL+GP G+GKS L + +A E+ N F L K L
Sbjct: 356 VLLYGPSGSGKSALIRKLADESGNHVVFIHMDDQLDGKTL 395
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 619 RIPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGERR 768
R+P I+ +GPPGTGK+ +AK++ + + + + S V+ + + R
Sbjct: 136 RLP--SIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVR 183
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK L+GPPGTGKS L A+A
Sbjct: 219 WKRSYFLYGPPGTGKSSLVAAMA 241
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 619 RIPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVS 747
+I + IL+ G PGTGK +A +A T F ++ S++ S
Sbjct: 63 KISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFS 106
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEANNSTF-FSVSSSDLVSKWLGERRSW 774
K I L GP G GK+ + +++A + F FSV V++ G RR++
Sbjct: 450 KIICLSGPTGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHRRTY 498
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVA 693
P + LL GPPG+GKS L KA++
Sbjct: 171 PGRLTLLLGPPGSGKSTLLKALS 193
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEANNS 711
P + LL GPPG+GKS L A+A + + S
Sbjct: 185 PGRMTLLLGPPGSGKSTLLLALAGKLDKS 213
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 619 RIPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVS 747
+I + IL+ G PGTGK+ +A +A T F ++ S++ S
Sbjct: 63 KIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFS 106
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 762
+LL GP G+GK+ LAK +A N + ++S + ++GE
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGE 306
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEANNS 711
P + LL GPPG GK+ L KA++ N+
Sbjct: 164 PGRLTLLLGPPGCGKTTLLKALSGNLENN 192
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 616 KRIPWKGILLFGPPGTGKSY 675
K+ PW L+ GPPGTGK++
Sbjct: 491 KQEPWPFTLVQGPPGTGKTH 510
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSK 750
+L+ G PGTGKS A A+A EA N + + DLV +
Sbjct: 16 LLITGTPGTGKSTTASALA-EATNLRYICI--GDLVKE 50
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVATEAN 705
ILL GP G+GK+ LAK +A N
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVN 248
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVA 693
+LL+GPPGTGK+ AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = -3
Query: 419 FWIPHPLLVFSFDLF*DI----PLIFQLYQDIEGILHECFLLPFHL----GPHILLHEEN 264
+W+ +L FSFD PL FQ Y D+ G+L FLL + G H+L N
Sbjct: 154 WWLCSFILSFSFDAHFITAKHEPLEFQDYADLTGLLASLFLLAVSIRGKTGFHLLESSGN 213
Query: 263 TLHVLI 246
T +L+
Sbjct: 214 TEPLLL 219
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 KGILLFGPPGTGKSYLAKAVATEANNSTF-FSVSSSDLVSKWLGERRSW 774
K I L GPPG GK+ + +++A + F FSV V++ G +++
Sbjct: 441 KIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTY 489
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVATEAN 705
+LL GP G+GK+ LAK +A N
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVN 333
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVA 693
+L +GPPGTGK+ A A+A
Sbjct: 33 MLFYGPPGTGKTTTALAIA 51
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAKAVA 693
+L +GPPGTGK+ A A+A
Sbjct: 45 MLFYGPPGTGKTTTALAIA 63
>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1311
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSY 675
PW L+ GPPGTGK++
Sbjct: 658 PWPFTLVQGPPGTGKTH 674
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAK 684
I+L G PG+GKSYLAK
Sbjct: 279 IILRGLPGSGKSYLAK 294
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 637 ILLFGPPGTGKSYLAK 684
I+L G PG+GKSYLAK
Sbjct: 279 IILRGLPGSGKSYLAK 294
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 643 LFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKW 753
++GPPG GK+ +A+ V + ++S SV ++ + +
Sbjct: 262 IWGPPGIGKTTIARVVYNQLSHSFQLSVFMENIKANY 298
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 709 NCWLQ*PQPLPSMTYQYQGVQIIRCPSMVFSCQ*TNV---EILLVELQPLSMLP*RLLDQ 539
NC+ Q P+P P +Y+GV + +V Q +++ E+L + L L L L
Sbjct: 851 NCYSQQPKPQP---IKYRGVDHLS-DMLVHYNQTSDILYYEVLDIPLPELQGLK-TLKVA 905
Query: 538 LHHSTSHEVSYHN 500
HH+T EV HN
Sbjct: 906 FHHATKEEVVIHN 918
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 709 NCWLQ*PQPLPSMTYQYQGVQIIRCPSMVFSCQ*TNV---EILLVELQPLSMLP*RLLDQ 539
NC+ Q P+P P +Y+GV + +V Q +++ E+L + L L L L
Sbjct: 852 NCYSQQPKPQP---IKYRGVDHLS-DMLVHYNQTSDILYYEVLDIPLPELQGLK-TLKVA 906
Query: 538 LHHSTSHEVSYHN 500
HH+T EV HN
Sbjct: 907 FHHATKEEVVIHN 919
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEANNS 711
P + LL GPPG GK+ L +A++ + ++S
Sbjct: 166 PGRMTLLLGPPGCGKTTLLQALSGKFSDS 194
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 625 PWKGILLFGPPGTGKSYLAKAVATEANNS 711
P + LL GPPG GK+ L +A++ ++S
Sbjct: 163 PGRMTLLLGPPGCGKTTLLQALSGRLSHS 191
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 628 WK-GILLFGPPGTGKSYLAKAVA 693
WK LL+GP GTGKS A+A
Sbjct: 230 WKRSYLLYGPSGTGKSSFVAAMA 252
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 610 TGKRIPWKGILLFGPPGTGKSYLAKAVATEANNST 714
TGK +P + + GP G GK+ A+A +A T
Sbjct: 486 TGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCT 520
>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 727
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 596 FHICLLAREYHGRASYYLDPLVLVSHTWQRLW 691
FH ++ R + G A ++ H WQR+W
Sbjct: 81 FHHDMVQRHFDGFAWVFVSQQFTQKHVWQRIW 112
>At4g09760.2 68417.m01603 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 346
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 707 IQHSSLFHHLIWFLNGWVSGEVGK 778
I+ +L HL W L G +SG V K
Sbjct: 294 IEKYTLASHLFWGLWGIISGYVNK 317
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 599 HICLLAREYHGRASYYLD 652
H C +A +YH + LD
Sbjct: 240 HFCEMAADYHSNTPHILD 257
>At4g09760.1 68417.m01602 choline kinase, putative similar to GmCK2p
choline kinase gi|1438881|gb|AAC49375
Length = 346
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 707 IQHSSLFHHLIWFLNGWVSGEVGK 778
I+ +L HL W L G +SG V K
Sbjct: 294 IEKYTLASHLFWGLWGIISGYVNK 317
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 599 HICLLAREYHGRASYYLD 652
H C +A +YH + LD
Sbjct: 240 HFCEMAADYHSNTPHILD 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,267
Number of Sequences: 28952
Number of extensions: 270296
Number of successful extensions: 1083
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -