Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0437
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    31   0.20 
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.5  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.8  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   7.7  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   7.7  

>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 288 PSATRCRNRCHVPG*LCQSEHVGRSSIAT-HCHVHFPTWDGILTLP 154
           P ATR RNR H  G      H G+  +AT +C+     WDG+  +P
Sbjct: 168 PVATRARNRLHELGGAIGCPHWGKFWLATLNCY----DWDGVNPIP 209


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 196 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISSEIQNYYESNFLKKLT 53
           P SL  L W++  A V    RVS  I  + +SS++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 341 HGPVHPAIEDHAQSLLKLLV 282
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 299 AIVRDPRLLDELDRESSPVSSWSNVG 376
           A V D    DELD+ SSP SS S+ G
Sbjct: 679 ATVEDDSPFDELDKFSSPFSSSSSRG 704


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 401 PLSNVETRPSPYSQHASHPSDHSLIYLGTMALTLIMSTAPLVGNR 535
           P + +    SP + H+S PSD  L   G M+    M+ AP VG+R
Sbjct: 429 PATRMPQTRSPVNDHSSFPSD--LPIKGEMSTN--MTGAPRVGSR 469


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 519 GAVDIISVRAMVPRYIRLWSLGCEAC*EYGLGRVSTFDSGVGSTSPVRPTL 367
           G  D  SV  +  R+++ W+ G      Y LG+  +  S      P RPTL
Sbjct: 33  GTCDQDSVHDLWRRFVKRWNDGKMKSKWYSLGKRISQPSYARLVGPSRPTL 83


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +2

Query: 272 HLVALGVLAAIVRDPRLLDELDRESSPVSS---WSNVGRTGDVLPTPLSNVETRPSPYSQ 442
           HLV  GV        ++  E++ E  P      +   G+  D LP P  NVE   +  S 
Sbjct: 115 HLV--GVTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARA--SN 170

Query: 443 HASHPSDHSLIYLG 484
           + + P D S +  G
Sbjct: 171 NGAAPPDLSCVVRG 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,003
Number of Sequences: 5004
Number of extensions: 67372
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)