Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0437
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 2.7
SB_23376| Best HMM Match : GPS (HMM E-Value=1.2) 29 4.6
SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34) 28 6.1
SB_48033| Best HMM Match : ShTK (HMM E-Value=0.0056) 28 8.1
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 28 8.1
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_9505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +2
Query: 251 GTWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPS 430
G HLF+H+ + VLA ++ P + +E ++ V R+ P +
Sbjct: 34 GFCHLFIHIAGVVVLAQMLLHPEVYEE-----KYYQTYGTVPRSAISNPNKTMFAQQPNF 88
Query: 431 PYSQHASHPSDHSLIYLGTMALTLIMSTAPLVGNRLICCPSSVFRS 568
PY HSL++ M +++ LV LI C S +++
Sbjct: 89 PYRGDVDRLDMHSLMFTVVMVCLIVL----LVKAYLIACVWSCYKT 130
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 210 CCFCLHVRTGTIILG 254
CC C+ VR GTI+LG
Sbjct: 20 CCCCMDVRIGTIVLG 34
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 395 AVHLQCAPHCSMNSLGMTHGPVHPAIEDHAQSLLKLLVPLGA 270
+VHLQ P N + H V P I HAQ L+L VP G+
Sbjct: 299 SVHLQWKPPFKPNGVIGYHVDVWPTINGHAQQ-LRLSVPHGS 339
>SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)
Length = 368
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 368 NVGRTGDVLPTPLSNVETRPSPYSQHA-SHPSDHSLIYL 481
N T P+PL + RP P S+HA + +D LIYL
Sbjct: 207 NSSLTDGFFPSPLKSAIARPLPKSKHAKTVENDVRLIYL 245
>SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 386 LQCAPHCSMNSLGMTHG--PVHPAIEDHAQSLLKLLVPLGAGTGAMSQD 246
L P ++N + G P+H A+ QS++KLL GA A ++D
Sbjct: 379 LSLEPRPNVNKVVSASGNTPLHAAVNCGNQSMVKLLANAGADLNAANED 427
>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
Length = 1330
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 335 PVHPAIEDHAQSLLKLLVPLGAGTGAMSQDN 243
P+H A + + S+L LL+ GA A + DN
Sbjct: 392 PLHKAAQTNNHSILHLLITKGANINARNNDN 422
>SB_48033| Best HMM Match : ShTK (HMM E-Value=0.0056)
Length = 64
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 265 QVPCPRIIVPVRTCRQKQHSHSLPRS 188
QVPCPR+ + +TC +K + +S
Sbjct: 9 QVPCPRVNLQRKTCEEKIEGYCADKS 34
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 251 GTWHLFLHLVALGVLAAIVRDPRLLDE 331
GT+HLF L+ + V A++ D +DE
Sbjct: 506 GTYHLFSSLIIMSVFVAVIVDNLEIDE 532
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 395 PTPLSNVETRPSPYSQHASHPSDHS 469
P P S V T+P P+S + P HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 341 ESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSD 463
+S+PV S V + P + +T+P+P Q AS SD
Sbjct: 474 QSNPVPEVSQVAPKASLAPKANALPQTKPTPQDQDASGDSD 514
>SB_9505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = +1
Query: 478 PGYHGSHTDYVYGAAR---GKPAYLLPFFC 558
P Y H YV G G+P+YL PF C
Sbjct: 403 PSYVMGHPSYVMGHPSYRMGQPSYLAPFLC 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436,891
Number of Sequences: 59808
Number of extensions: 531771
Number of successful extensions: 1493
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -