Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0437
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18570.1 68414.m02316 myb family transcription factor (MYB51)...    31   0.71 
At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   3.8  
At4g32630.1 68417.m04645 hypothetical protein                          28   5.0  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    28   6.6  
At1g27090.1 68414.m03302 glycine-rich protein                          28   6.6  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    27   8.8  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    27   8.8  

>At1g18570.1 68414.m02316 myb family transcription factor (MYB51)
           contains PFAM profile: PF00249
          Length = 352

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 25/89 (28%), Positives = 43/89 (48%)
 Frame = +2

Query: 320 LLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALT 499
           +L E+     P++S S+   T     T   +V++  S  S  +S     +L+  GT+A T
Sbjct: 190 VLSEIIGSGGPLASTSHTTNT----TTTSVSVDSE-SVKSTSSSFAPTSNLLCHGTVATT 244

Query: 500 LIMSTAPLVGNRLICCPSSVFRSSTLPSP 586
            + S   + GN  + C SS F  S++ +P
Sbjct: 245 PVSSNFDVDGNVNLTCSSSTFSDSSVNNP 273


>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 226 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 125
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 344 SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALT 499
           +SP ++ ++ G +G V+P    N+ T+ +    +   PSD S+    T+A+T
Sbjct: 361 TSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPSDFSMEQT-TLAIT 411


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 512 TAPLVGNRLICCPSSVFRSSTLPSP 586
           T  ++GN LIC P +V   S +P P
Sbjct: 193 TFKVIGNALICGPKAVSNCSAVPEP 217


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 385 RCTAHTTVKCGNSSQPILSTCFTS 456
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 505 YVYGAARGKPAYLLPFFCLQIFD 573
           Y Y   R KP YL+ F C Q  D
Sbjct: 50  YAYSTTRSKPVYLVDFSCHQPTD 72


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 505 YVYGAARGKPAYLLPFFCLQIFD 573
           Y Y   R KP YL+ F C Q  D
Sbjct: 50  YAYSTTRSKPVYLVDFSCHQPTD 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,841
Number of Sequences: 28952
Number of extensions: 369790
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)