Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0436
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   1.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   1.5  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    27   3.5  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    26   6.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   6.1  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 9   ETMSSAERALRHGQMKQLKDMRRQYKQKSAEDSKRKKR 122
           ++M SAER     +  + KD R +Y +   E +K++KR
Sbjct: 74  DSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKR 111


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 526 YLSLLETTKPYIVNSMRMPAAQTLLLLAHSIDT 624
           YL+LLE  KP+++  + +P    L L+   I+T
Sbjct: 72  YLALLENEKPFVLKRIYVPDKTALQLVHGEIET 104


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 3   EPETMSSAERALRHGQMKQLKDMRRQYKQKSAEDSKR----KKRLKIDSWEIV 149
           E E  SS   +LR+G +KQ+     Q   K+ + +K+    +K++  D W ++
Sbjct: 139 EIEETSSKLESLRNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYDLWHLI 191


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 334 FIGNCYLWVQRSG*HNLQHD 275
           F G+CY W Q+   H  +HD
Sbjct: 377 FGGHCYYWDQKQHDHPYEHD 396


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 130 IFKRFLRFESSADFCLYCLLMSLSCFIWP 44
           +F+ F+      DFC Y +LM L+   WP
Sbjct: 206 VFRHFVDLILMCDFCSY-ILMGLAWTCWP 233


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 24  AERALRHGQMKQLKDMRRQYKQKSAEDSKRKKRL 125
           AER  R  + ++ K+ +++ K++   + ++KK+L
Sbjct: 134 AERKQRLKEQREKKEQKKEQKKEKKTERRKKKKL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,485
Number of Sequences: 5004
Number of extensions: 56866
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)