Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0436
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)                    63   2e-10
SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)             29   4.9  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             29   4.9  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_13241| Best HMM Match : RTP801_C (HMM E-Value=4)                    28   6.5  
SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   6.5  
SB_55872| Best HMM Match : SSIII (HMM E-Value=3)                       28   8.6  

>SB_683| Best HMM Match : zf-C2H2 (HMM E-Value=0.85)
          Length = 272

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 26/49 (53%), Positives = 35/49 (71%)
 Frame = +1

Query: 544 TTKPYIVNSMRMPAAQTLLLLAHSIDTNIGFTRIVCDSWLLLEFPYPET 690
           T KPY+VNSMR+P  QTL+L A S+DTN   TR++ D+WL +  P  +T
Sbjct: 2   TNKPYLVNSMRVPGLQTLMLFARSLDTNADLTRVIADTWLEVRLPDAKT 50


>SB_59639| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
          Length = 576

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 54  KQLKDMRRQ--YKQKSAEDSKRKKRLKIDSWEIV 149
           K+ K M RQ  Y QK  E +KRKK+ K    +IV
Sbjct: 83  KRQKRMERQEAYNQKMVEQTKRKKKQKFKKDDIV 116


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 54  KQLKDMRRQ--YKQKSAEDSKRKKRLKIDSWEIV 149
           K+ K M RQ  Y QK  E +KRKK+ K    +IV
Sbjct: 78  KRQKRMERQEAYNQKMVEQTKRKKKQKFKKDDIV 111


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 24  AERALRHGQMKQLKDMRRQYKQKSAEDSKR-KKRLK 128
           A  ALR   + Q+KD+ RQY+++  E+ +  +KR++
Sbjct: 688 AAEALRIKYLGQIKDLERQYREQPPEEQEALQKRIE 723


>SB_13241| Best HMM Match : RTP801_C (HMM E-Value=4)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 638 VNPILVSMECANSSRVC 588
           +N  LV ++C NSSRVC
Sbjct: 108 INETLVQLQCGNSSRVC 124


>SB_17130| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 994

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 638 VNPILVSMECANSSRVC 588
           +N  LV ++C NSSRVC
Sbjct: 512 INETLVQLQCGNSSRVC 528


>SB_55872| Best HMM Match : SSIII (HMM E-Value=3)
          Length = 183

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 3   EPETMSSAERALRHGQMKQLKDMRRQYKQKSAEDSKRKKRLKID 134
           EPE +   E    H   +  KD  R+ K+K  ++ K KK+  +D
Sbjct: 34  EPEYVDEDEEEEEHSDEESTKD--RKEKKKKEKEKKPKKKFSLD 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,370,429
Number of Sequences: 59808
Number of extensions: 471142
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)