Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0436
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17220.1 68417.m02590 expressed protein                             31   1.0  
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    29   2.3  
At2g15270.1 68415.m01741 expressed protein                             28   5.3  
At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    28   7.1  
At1g72090.1 68414.m08333 radical SAM domain-containing protein /...    27   9.3  
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    27   9.3  

>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 27  ERALRHGQMKQLKDMRRQYKQKSAEDSKRKKRLKI 131
           ER + HG+M++LKD     ++ +  +S+ K+RLK+
Sbjct: 281 ERRILHGEMQKLKDKLAVSERTAKAESQLKERLKL 315


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 410 SYFGKQPRVLMLTEADIQTDPPAGYKSKLPLSA 508
           S+F + P+ L         DPPAGY ++ P S+
Sbjct: 542 SFFQQSPQKLFKVSDPYSMDPPAGYMNETPYSS 574


>At2g15270.1 68415.m01741 expressed protein
          Length = 194

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 69  MRRQYKQKSAEDSKRKKRLK 128
           +RR+ KQK+AE+   KKRLK
Sbjct: 114 IRREEKQKAAEEKTSKKRLK 133


>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
           similarity to COP1-Interacting Protein 7 (CIP7)
           [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 6   PETMSSAERA-LRHGQMKQLK-DMRRQYKQKSAEDSKRKKRLKID 134
           P  MS  + A  R  +++  K D+++  K+K  ED KR + LKI+
Sbjct: 725 PTKMSPLDEARARADKLRNFKADLQKMKKEKEEEDRKRIEALKIE 769


>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
           TRAM domain-containing protein contains Pfam profiles
           PF00919: UPF0004 family protein, PF04055: radical SAM
           domain protein, PF01938: TRAM domain
          Length = 601

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 485 KSKLPLSANTSYCVICLCSKQ 547
           ++KLP S+N S C  C CS +
Sbjct: 502 ETKLPCSSNVSTCETCTCSAE 522


>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 327 PMNSIIASP*PNNCTTLGVSPSCSYTPPRISGSSPA 434
           P+ ++  +P P +   +  SP    TPP I  SSPA
Sbjct: 190 PVQNMGMTPTPTSAPAIQPSPVTGVTPPGIPTSSPA 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,039
Number of Sequences: 28952
Number of extensions: 315641
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)