Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0435
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 130 3e-31
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 8e-22
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 89 5e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 85 1e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 85 1e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 81 2e-16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 81 2e-16
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 81 2e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 3e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 75 1e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 73 6e-14
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 69 1e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 68 1e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 2e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 5e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 66 5e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 65 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 64 2e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 62 8e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 1e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 59 6e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 59 8e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 53 4e-08
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 48 2e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 48 2e-06
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 46 4e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 44 2e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 1e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 32 0.077
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 32 0.10
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.72
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.95
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.3
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 5.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 6.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.9
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 8.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.9
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 130 bits (313), Expect = 3e-31
Identities = 57/92 (61%), Positives = 75/92 (81%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
DR QRERE AL FR+G+T I+VATAVA+RGLDIP+V HVIN+DLP+D+++YVHRIGRTG
Sbjct: 463 DRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTG 522
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSSRLNK 530
R GN G A +FFN N+G+A++L++ N+
Sbjct: 523 RAGNTGQAVAFFNRNNKGIAKELIELLQEANQ 554
Score = 57.2 bits (132), Expect = 2e-09
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +2
Query: 2 LYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFV 181
L +YVFL+VGRVGSTSENITQKVV V++ +KRS+ P E L L+FV
Sbjct: 386 LKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDIL-------HTLPPEG-LTLIFV 437
Query: 182 ETKKV 196
ETK++
Sbjct: 438 ETKRM 442
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 196 ADQLEEYLYSQGYPVTSIHGTVTNVNVKMLYDVF 297
AD L +YL + +P TSIHG T + ++F
Sbjct: 443 ADTLTDYLLNSNFPATSIHGDRTQRERERALELF 476
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 509 LLVEAKQDVPNWLTSTAADXXXXXXXXXXXXXXXNARYGGSGFGSRDFR 655
LL EA Q+ P++L + A + R GG+ +G+RDFR
Sbjct: 548 LLQEANQECPSFLIAMARESSFGGNGRGGRYSGRGGR-GGNAYGARDFR 595
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.7 bits (235), Expect = 8e-22
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D+ Q ER+ L FRTG++PI+VAT VA+RG+D+ + HV N+D P + E+YVHRIGRTG
Sbjct: 402 DKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTG 461
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSS 518
R G G A ++F N AR+LV S
Sbjct: 462 RAGAKGTAYTYFTSDNAKQARELVSILS 489
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 89.4 bits (212), Expect = 5e-19
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q R AL F++G+ P+LVAT VAARGLDIP V+ VIN P +E+YVHRIGRTG
Sbjct: 449 DMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTG 508
Query: 435 RMGNLGVATSFFNDTNRGLARDLVD 509
R G A +FF ++ A +LV+
Sbjct: 509 RANTKGTAITFFTPQDKSHAGELVN 533
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/69 (55%), Positives = 49/69 (71%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q +RE+AL +FR G+ +L+AT + ARG+D V+ VINFD P V Y+HRIGRTGR G
Sbjct: 324 QAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAG 383
Query: 444 NLGVATSFF 470
N G A +FF
Sbjct: 384 NTGQAVTFF 392
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 85.0 bits (201), Expect = 1e-17
Identities = 42/82 (51%), Positives = 54/82 (65%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
QRER ++L RFR ILVAT VA+RGLDIP V+ VINFDLP D ++Y+HR+GRT R G
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAG 353
Query: 444 NLGVATSFFNDTNRGLARDLVD 509
G + S + + L + D
Sbjct: 354 RSGESISIVTERDVDLVHAIED 375
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.0 bits (191), Expect = 2e-16
Identities = 33/82 (40%), Positives = 55/82 (67%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +R+ + ++ G +L+AT+V ARGLD+ ++ V+N+D P+ +E+YVHR+GRTGR
Sbjct: 702 KDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGR 761
Query: 438 MGNLGVATSFFNDTNRGLARDL 503
G+ GVA +F A D+
Sbjct: 762 AGHTGVAVTFITPEQEKYAVDI 783
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/80 (43%), Positives = 55/80 (68%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q+ER+ ++ FR G + +L+ T + ARG+D+ V VIN+DLP++ E Y+HRIGR+GR G
Sbjct: 296 QKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFG 355
Query: 444 NLGVATSFFNDTNRGLARDL 503
GVA +F + + + RD+
Sbjct: 356 RKGVAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/83 (42%), Positives = 55/83 (66%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q +R+ + FRTG + IL+ T + ARG+D+ V VIN+DLP++ E Y+HRIGR G
Sbjct: 291 DMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGG 350
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G GV+ +F + + + R++
Sbjct: 351 RFGRKGVSINFVTNDDVRMMREI 373
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/94 (40%), Positives = 57/94 (60%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +RE A+ + R ILVAT +A RG+DIP+V V+N+++ +E+Y HRIGRTGR
Sbjct: 550 KSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGR 609
Query: 438 MGNLGVATSFFNDTNRGLARDLVDCSSRLNKTYL 539
G G A +F + + DL SR K ++
Sbjct: 610 AGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHI 643
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q R AL +F++G LVAT VAARGLDIP V VIN+D+P+D + Y+HR+GRT R
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 441 GNLG 452
G G
Sbjct: 380 GRAG 383
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 72.5 bits (170), Expect = 6e-14
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q R + + FR G+T +LV T VA+RG+DIP + +VIN+D P + +VHR+GRT R
Sbjct: 381 DQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARA 440
Query: 441 GNLGVATSFFNDTNRGLARDL 503
G G A S + G DL
Sbjct: 441 GRTGWAYSLVRAEDAGYLLDL 461
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 68.5 bits (160), Expect = 1e-12
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLP------SDVEEYVHRIGRT 431
+R+ + FR G + +LV T V ARG+D+ V V+N+D+P D + Y+HRIGRT
Sbjct: 390 QRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 449
Query: 432 GRMGNLGVATSFFND 476
GR G +GV+ +F +D
Sbjct: 450 GRFGRVGVSINFVHD 464
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 68.1 bits (159), Expect = 1e-12
Identities = 35/89 (39%), Positives = 53/89 (59%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q +R AL FR G+ L+AT VA+RG+DI + VIN++ P+ E Y+HR+GRT R
Sbjct: 539 SQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARA 598
Query: 441 GNLGVATSFFNDTNRGLARDLVDCSSRLN 527
G G A + + +R + + + SS N
Sbjct: 599 GRSGRAITLAGEGDRKVLKGVFKNSSAQN 627
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/74 (44%), Positives = 43/74 (58%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV + + RG+DI V VINFD P + E Y+HRIGR+GR G
Sbjct: 317 QSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 376
Query: 444 NLGVATSFFNDTNR 485
+ G+A SF + +R
Sbjct: 377 HRGLAISFISWADR 390
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q++R +L +F+ +LV T VAARG+DIP V HVI++ +P + YVHR GRT R
Sbjct: 424 DQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARA 483
Query: 441 GNLGVA 458
GV+
Sbjct: 484 NEDGVS 489
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 449
ER+ + RF TG +LV + + ARG+D+ + ++VIN+D P V YVHRIGRT R G
Sbjct: 475 ERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGRE 534
Query: 450 GVA 458
G A
Sbjct: 535 GFA 537
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q ER + F+ I VAT V RG+DI V VIN+D+P + Y+HR+GR GR G
Sbjct: 331 QEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFG 390
Query: 444 NLGVATSFFNDTNRGLARDLVDCSSRLNKTYL 539
G+A +F + D + +N T L
Sbjct: 391 TKGLAITFSSSEEDSQILDKIQERFEVNITEL 422
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.5 bits (150), Expect = 2e-11
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 449
+R FR Q+ IL AT V ARG+D P++ V+ PS+ ++Y+HRIGRTGR G
Sbjct: 331 QRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKT 390
Query: 450 GVA 458
G A
Sbjct: 391 GEA 393
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.1 bits (144), Expect = 8e-11
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
+ Q+ R + F + IL+ T VAARGLDIP V ++ +D P D +Y+HR+GRT R
Sbjct: 370 QKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR 429
Query: 438 MGNLGVATS--FFNDTNRGLARDLVDCSSRLNK 530
G G S F + G R L LN+
Sbjct: 430 -GTKGTGKSLMFLAPSELGFLRYLKTAKVSLNE 461
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +3
Query: 261 NQREREDALRRFRTGQ---TPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 431
+Q+ R L F + + + IL+ T VAARGLD+P+V V+ +D P ++Y+HRIGRT
Sbjct: 478 SQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRT 537
Query: 432 GRMGNLGVATSF 467
R G+ G A F
Sbjct: 538 ARAGHNGAAIMF 549
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 59.3 bits (137), Expect = 6e-10
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
+ Q R + +F + + +L T + ARGLD P V VI D P DV+ Y+HR+GRT R
Sbjct: 319 QKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTAR 378
Query: 438 MGNLGVA 458
G A
Sbjct: 379 YNRSGNA 385
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 QREREDALRRFR-TGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
Q R +F+ + + +L T +A+RGLDIP+V V+ D P D + + HR GR GR
Sbjct: 294 QSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRA 353
Query: 441 GNLGVATSFFND 476
G GVA ND
Sbjct: 354 GRAGVAIVLLND 365
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 339 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 467
ARGLD +V V+NFD+PS+ + Y+HRIGRT R G G A SF
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 267 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 446
R ++D L +F+TG+ +L+ATAVA G+D+P VI F++ V +YV GR M +
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 246 DPWDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIG 425
D D ++ DA R G+T I++AT G++ VR V+++ LP+ +YV G
Sbjct: 1452 DVSDEERQMNFDAFRN-ANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 426 RTGRMGNLGVATSFF 470
R GR G +A F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 246 DPWDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIG 425
D D ++ DA R G+T I++AT G++ VR V+++ LP+ +YV G
Sbjct: 1452 DVSDEERQMNFDAFRN-ANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 426 RTGRMGNLGVATSFF 470
R GR G +A F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
NQ ++++ + +FR G LVAT++ GLDI +I +D S + R+GRTGR
Sbjct: 516 NQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
+Q+ + + +++F+ G+ L+AT++ GLDI V +I +D + + R+GRTGR
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 449
ER+ +++G I+VAT G+D VR VI+ P +E Y GR GR G
Sbjct: 781 ERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKP 840
Query: 450 GVATSFFN 473
F++
Sbjct: 841 AHCIMFYS 848
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 32.3 bits (70), Expect = 0.077
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHV 365
+ N ERE ++ FR + P+LV V G DIP++
Sbjct: 298 ETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNI 334
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 315 ILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 467
+ VA RGL +P + H+ + Y H GR G MG G +F
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNF 524
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFD-LPSDVEEYVHRIGRTGR 437
N+R R+ FR GQ +++AT + G+++P V D L + + GR GR
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFHQAAGRAGR 1292
Query: 438 MG 443
G
Sbjct: 1293 RG 1294
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 517 DEQSTRSRAKPRFVSLKKEVAT 452
++QSTRSR+KPR +S KE T
Sbjct: 99 EQQSTRSRSKPRIIS-NKETTT 119
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 247 IHGTVTNVNVKMLYDVFELDKHQYLWQQLS 336
IHG +N+ + ++D ELD+ +WQ +S
Sbjct: 344 IHGPDSNIMLHKVFDDVELDEAGKVWQSIS 373
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +3
Query: 267 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 446
+ER G+ ++AT G+DI + VI P + + GR GR
Sbjct: 597 QERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNK 656
Query: 447 LGVA 458
+A
Sbjct: 657 SSLA 660
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 103 FIGFTKCIKL-ATTCTSRRGSTYTCVCGN*EGADQLEEYLYSQGYPVTSIHGTVTNVNVK 279
F+ + C L + CT++ +C EG LE + Y V +HG + NVK
Sbjct: 515 FLHYIYCGTLNGSYCTAKNLCNLLILCKGFEG---LETFF---AYIVHLLHGVLNRNNVK 568
Query: 280 MLYDVFEL 303
++Y+ L
Sbjct: 569 LIYETAAL 576
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEY 410
++ TP+++ VA + L+I V H N DL ++E+Y
Sbjct: 1436 KSENTPLILNFMVAIQHLNIQAVNHAYN-DLLIEMEDY 1472
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 226 GNINILLVDPHLLSFHK-HKYKLILFGTC 143
GN ++L PHLLSF+K H+ ++ C
Sbjct: 914 GNPDVLDSSPHLLSFNKRHRLADVVADVC 942
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 276 EDALRRFRT---GQTPILVATAVAARGLDIPHVRHVIN 380
ED ++ F + G +VAT VA + IP++R+V++
Sbjct: 714 EDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,266
Number of Sequences: 5004
Number of extensions: 47208
Number of successful extensions: 204
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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