Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0435
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      111   5e-27
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  111 bits (268), Expect = 5e-27
 Identities = 56/94 (59%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
 Frame = +3

Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
           DR QR+RE+AL  F++G+  ILVATAVAARGLDI +V HVIN+DLP  ++EYVHRIGRTG
Sbjct: 484 DRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTG 543

Query: 435 RMGNLGVATSFFN-DTNRGLARDLVDCSSRLNKT 533
           R+GN G ATSFF+ + +  L  DLV    + N++
Sbjct: 544 RVGNRGRATSFFDPEEDAPLRGDLVRILKQANQS 577



 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 2   LYNYVFLAVGRVGSTSENITQKVVWVDEMDKR 97
           L NY+FLAVG VG    ++ Q    V    K+
Sbjct: 404 LNNYLFLAVGIVGGACSDVEQNFYEVARNKKK 435



 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 ADQLEEYLYSQGYPVTSIHG 255
           AD +  +L    YP TSIHG
Sbjct: 464 ADFIAVFLSENNYPTTSIHG 483



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 506 RLLVEAKQDVPNWL 547
           R+L +A Q VP+W+
Sbjct: 569 RILKQANQSVPDWM 582


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 556 GASKPIRYVLFSLDEQSTRSRAKPR 482
           GAS PI   +++ ++QST   A PR
Sbjct: 55  GASLPIDVDVYNTEQQSTVFVAIPR 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,756
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)