Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0435
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 137 9e-33
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 136 2e-32
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 136 2e-32
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 133 1e-31
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 108 5e-24
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 105 4e-23
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 105 4e-23
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 105 4e-23
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 98 5e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 98 6e-21
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 8e-21
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 97 8e-21
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 97 1e-20
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 95 6e-20
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 88 7e-18
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 85 5e-17
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 85 6e-17
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 85 6e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 85 6e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 83 1e-16
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 82 3e-16
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 82 3e-16
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 82 4e-16
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 81 8e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 81 1e-15
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 80 1e-15
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 80 2e-15
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 79 4e-15
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 79 4e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 77 1e-14
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 77 1e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 77 1e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 76 3e-14
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 74 9e-14
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 70 1e-12
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 70 1e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 70 1e-12
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 68 6e-12
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 68 6e-12
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 66 2e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 66 2e-11
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 66 2e-11
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 66 2e-11
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 66 2e-11
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 65 4e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 65 4e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 64 7e-11
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 64 7e-11
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 64 1e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 63 2e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 63 2e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 62 5e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 61 7e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 61 7e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 61 7e-10
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 59 4e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 56 2e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 56 3e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 56 3e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 55 4e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 52 4e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 51 7e-07
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 50 1e-06
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 49 4e-06
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 48 7e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 47 2e-05
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 45 6e-05
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 45 6e-05
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 41 8e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 40 0.002
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 40 0.002
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 40 0.002
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 40 0.002
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 40 0.002
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 36 0.022
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 36 0.029
At1g53050.1 68414.m06007 protein kinase family protein contains ... 29 4.4
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 28 7.7
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 28 7.7
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 137 bits (331), Expect = 9e-33
Identities = 61/92 (66%), Positives = 76/92 (82%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
DR+Q+ERE ALR F+TG+TPILVAT VAARGLDIPHV HV+NFDLP+D+++YVHRIGRTG
Sbjct: 438 DRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 497
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSSRLNK 530
R GN G+AT+FFND N +A+ L + N+
Sbjct: 498 RAGNSGLATAFFNDNNTTMAKPLAELMQEANQ 529
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +2
Query: 2 LYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFV 181
L NY+FLAVGRVGS+++ I Q+V +V + DKRS + + L LVFV
Sbjct: 355 LSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRS--HLMDLLHAQRENGNQGKQALTLVFV 412
Query: 182 ETKK 193
ETKK
Sbjct: 413 ETKK 416
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 190 EGADQLEEYLYSQGYPVTSIHG 255
+GAD LE +L G+P T+IHG
Sbjct: 416 KGADSLENWLCINGFPATTIHG 437
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 509 LLVEAKQDVPNWLTSTAADXXXXXXXXXXXXXXXNARYGGSGFGSRDFRTQ 661
L+ EA Q+VP+WLT A+ N R GG FG RDFR +
Sbjct: 523 LMQEANQEVPDWLTRYAS--------RASFGGGKNRRSGGR-FGGRDFRRE 564
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 136 bits (328), Expect = 2e-32
Identities = 61/92 (66%), Positives = 74/92 (80%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
DR Q+ERE ALR F+TG+TPILVAT VAARGLDIPHV HV+NFDLP+D+++YVHRIGRTG
Sbjct: 441 DRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 500
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSSRLNK 530
R G G+AT+FFN+ N LAR L + N+
Sbjct: 501 RAGKSGIATAFFNENNAQLARSLAELMQEANQ 532
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = +2
Query: 8 NYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVET 187
NY+FLAVGRVGS+++ ITQ+V +V E DKRS QR ++ L LVFVET
Sbjct: 362 NYIFLAVGRVGSSTDLITQRVEFVQESDKRS----HLMDLLHAQRETQDKQSLTLVFVET 417
Query: 188 KK 193
K+
Sbjct: 418 KR 419
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 193 GADQLEEYLYSQGYPVTSIHGTVT 264
GAD LE +L +P TSIHG T
Sbjct: 420 GADTLENWLCMNEFPATSIHGDRT 443
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 136 bits (328), Expect = 2e-32
Identities = 61/92 (66%), Positives = 74/92 (80%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
DR Q+ERE ALR F+TG+TPILVAT VAARGLDIPHV HV+NFDLP+D+++YVHRIGRTG
Sbjct: 441 DRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 500
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSSRLNK 530
R G G+AT+FFN+ N LAR L + N+
Sbjct: 501 RAGKSGIATAFFNENNAQLARSLAELMQEANQ 532
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/62 (50%), Positives = 40/62 (64%)
Frame = +2
Query: 8 NYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVET 187
NY+FLAVGRVGS+++ ITQ+V +V E DKRS QR ++ L LVFVET
Sbjct: 362 NYIFLAVGRVGSSTDLITQRVEFVQESDKRS----HLMDLLHAQRETQDKQSLTLVFVET 417
Query: 188 KK 193
K+
Sbjct: 418 KR 419
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 193 GADQLEEYLYSQGYPVTSIHGTVT 264
GAD LE +L +P TSIHG T
Sbjct: 420 GADTLENWLCMNEFPATSIHGDRT 443
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 133 bits (322), Expect = 1e-31
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
DR Q+ERE AL+ F++G+TPILVAT VAARGLDIPHV HV+NFDLP+D+++YVHRIGRTG
Sbjct: 451 DRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 510
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDCSSRLNK 530
R G G+AT+FFND N LAR L + N+
Sbjct: 511 RAGKSGLATAFFNDGNTSLARPLAELMQEANQ 542
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +2
Query: 2 LYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFV 181
L NY+FLAVGRVGS+++ I Q+V +V + DKRS + + L LVFV
Sbjct: 368 LANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRS--HLMDLLHAQRENGIQGKQALTLVFV 425
Query: 182 ETKK 193
ETK+
Sbjct: 426 ETKR 429
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 193 GADQLEEYLYSQGYPVTSIHGTVTNVNVKMLYDVFE 300
GAD LE +L G+P TSIHG T ++ F+
Sbjct: 430 GADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 465
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +2
Query: 509 LLVEAKQDVPNWLTSTAADXXXXXXXXXXXXXXXNARYGGSGFGSRDFRTQ 661
L+ EA Q+VP WLT A+ N R GG FG RDFR +
Sbjct: 536 LMQEANQEVPEWLTRYAS--------RSSFGGGKNRRSGGR-FGGRDFRRE 577
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 108 bits (259), Expect = 5e-24
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q ER+D L +FR+G+TP+LVAT VAARGLD+ +R V+N+D P+ VE+YVHRIGRTG
Sbjct: 506 DKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTG 565
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G G+A +FF D + A DL+
Sbjct: 566 RAGATGLAYTFFGDQDAKHASDLI 589
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 105 bits (251), Expect = 4e-23
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q ER++ L +FR+G+TP+LVAT VAARGLD+ +R V+N+D P+ VE+YVHRIGRTG
Sbjct: 435 DKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G G A +FF D + A DL+
Sbjct: 495 RAGATGQAFTFFGDQDSKHASDLI 518
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 105 bits (251), Expect = 4e-23
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q ER++ L +FR+G+TP+LVAT VAARGLD+ +R V+N+D P+ VE+YVHRIGRTG
Sbjct: 435 DKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G G A +FF D + A DL+
Sbjct: 495 RAGATGQAFTFFGDQDSKHASDLI 518
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 105 bits (251), Expect = 4e-23
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q ER++ L +FR+G+TP+LVAT VAARGLD+ +R V+N+D P+ VE+YVHRIGRTG
Sbjct: 435 DKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTG 494
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G G A +FF D + A DL+
Sbjct: 495 RAGATGQAFTFFGDQDSKHASDLI 518
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q ER+ L FR+G++PI+ AT VAARGLD+ V++VIN+D P +E+YVHRIGRTG
Sbjct: 377 DKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 436
Query: 435 RMGNLGVATSFFNDTNRGLARDLVD 509
R G G A +FF N A++L +
Sbjct: 437 RAGAKGTAYTFFTVANARFAKELTN 461
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 97.9 bits (233), Expect = 6e-21
Identities = 48/85 (56%), Positives = 59/85 (69%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
++ Q ER +L F+ G P+LVAT VAARGLDIP V VIN+ P E+YVHRIGRTG
Sbjct: 399 NKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTG 458
Query: 435 RMGNLGVATSFFNDTNRGLARDLVD 509
R G GVA +FF N+GLA +LV+
Sbjct: 459 RAGKKGVAHTFFTPLNKGLAGELVN 483
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 97.5 bits (232), Expect = 8e-21
Identities = 42/84 (50%), Positives = 61/84 (72%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D+ Q ER+ L F++G++PI+ AT VAARGLD+ ++ V+N+D P+ +E+Y+HRIGRTG
Sbjct: 443 DKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTG 502
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G G+A +FF N AR+LV
Sbjct: 503 RAGAKGMAFTFFTHDNAKFARELV 526
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 97.5 bits (232), Expect = 8e-21
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D+ Q ER+ L +FR+G++ +L+AT VAARGLDI +R VIN+D P+ VE+YVHRIGRTG
Sbjct: 712 DKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTG 771
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
R G GVA +FF + + A DL+
Sbjct: 772 RAGATGVAFTFFTEQDWKYAPDLI 795
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 39/72 (54%), Positives = 57/72 (79%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +RE A+ F+ G+ +LVAT VA++GLD P ++HVIN+D+P+++E YVHRIGRTGR
Sbjct: 431 KDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 490
Query: 438 MGNLGVATSFFN 473
G G+AT+F N
Sbjct: 491 CGKTGIATTFIN 502
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 94.7 bits (225), Expect = 6e-20
Identities = 38/72 (52%), Positives = 56/72 (77%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +R+ A+ F+ G+ +LVAT VA++GLD P ++HVIN+D+P ++E YVHRIGRTGR
Sbjct: 382 KDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGR 441
Query: 438 MGNLGVATSFFN 473
G G+AT+F N
Sbjct: 442 CGKTGIATTFIN 453
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 87.8 bits (208), Expect = 7e-18
Identities = 40/70 (57%), Positives = 50/70 (71%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +RE +L FR + +LVAT V RG+DIP V HVIN+D+P +E Y HRIGRTGR
Sbjct: 610 KSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGR 669
Query: 438 MGNLGVATSF 467
G GVATSF
Sbjct: 670 AGKSGVATSF 679
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/83 (43%), Positives = 59/83 (71%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D+ Q+ER+D + +FR+ ++ +L+A+ V ARG+D+ V HVIN+D+P++ E Y+HRIGR G
Sbjct: 294 DKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAG 353
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G GVA +F ++ +D+
Sbjct: 354 RFGREGVAINFVKSSDMKDLKDI 376
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/84 (46%), Positives = 54/84 (64%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
++ +ER D + F G+ P+LV+T V RG+D+ VR VI FD+PS ++EY+H IGR
Sbjct: 391 EKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRAS 450
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
RMG G A F N+ +R L DLV
Sbjct: 451 RMGEKGTAIVFVNEDDRNLFPDLV 474
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/84 (46%), Positives = 54/84 (64%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
++ +ER D + F G+ P+LV+T V RG+D+ VR VI FD+PS ++EY+H IGR
Sbjct: 254 EKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRAS 313
Query: 435 RMGNLGVATSFFNDTNRGLARDLV 506
RMG G A F N+ +R L DLV
Sbjct: 314 RMGEKGTAIVFVNEDDRNLFPDLV 337
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 84.6 bits (200), Expect = 6e-17
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q R AL +F++G+ PIL+AT VA+RGLDIP V VIN+D+P D +YVHR+GRT R
Sbjct: 337 SQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA 396
Query: 441 GNLGVATSFFNDTN 482
G G+A S +T+
Sbjct: 397 GRGGLAVSIITETD 410
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q +RE + F+ +L+AT+VAARGLD+ + V+NFD P+ E+YVHR+GRTGR
Sbjct: 810 KDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGR 869
Query: 438 MGNLGVATSFFNDTNRGLARDLV 506
G G A +F ++ + A DLV
Sbjct: 870 AGRKGCAVTFISEDDAKYAPDLV 892
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D Q+ER+ + FR+G + +L+ T V ARG+D+ V VIN+DLP++ E Y+HRIGR+G
Sbjct: 307 DMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 366
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G GVA +F + + RD+
Sbjct: 367 RFGRKGVAINFVKSDDIKILRDI 389
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q R+ +R FR+G + +L+ T + ARG+D+ V VINFDLP+ E Y+HRIGR+G
Sbjct: 313 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 372
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G GVA +F + + D+
Sbjct: 373 RFGRKGVAINFMTSEDERMMADI 395
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 81.8 bits (193), Expect = 4e-16
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +3
Query: 123 HQTCYNVHVPKRINLYLCLWKLRRCGSTRRIFIFPRLPG-NIDP--WDRNQREREDALRR 293
++ CY V++ + + R C TR + + R G P Q +R AL +
Sbjct: 246 YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNK 305
Query: 294 FRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN 473
F+ G+ ILV T VA+RGLDIP V VIN+D+P++ ++Y+HR+GRT R G GV S N
Sbjct: 306 FKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVN 365
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 81.0 bits (191), Expect = 8e-16
Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q +RE L FR G+ +LVAT VA+RGLDIP+V VI+++LP+D E +VHR GRTG
Sbjct: 383 DISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTG 442
Query: 435 RMGNLGVA----TSFFNDTNRGLARDL 503
R G G A TS T R L RD+
Sbjct: 443 RAGKEGSAILMHTSSQKRTVRSLERDV 469
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +3
Query: 267 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 446
R +E ++ F++ +L+AT+VAARGLD+ + V+NFD P+ E+YVHR+GRTGR G
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 447 LGVATSFFNDTNRGLARDLV 506
G A +F ++ + A DLV
Sbjct: 711 KGCAVTFISEDDAKYAPDLV 730
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q R+ +R FR+G + +L+ T + ARG+D+ V VINFDLP+ E Y+HRIGR+G
Sbjct: 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 370
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G GVA +F + + D+
Sbjct: 371 RFGRKGVAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q R+ +R FR+G + +L+ T + ARG+D+ V VINFDLP+ E Y+HRIGR+G
Sbjct: 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 370
Query: 435 RMGNLGVATSF 467
R G GVA +F
Sbjct: 371 RFGRKGVAINF 381
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/78 (47%), Positives = 51/78 (65%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q +R D+L FR + L+AT VAARGLDI V+ VIN+ P +++ YVHR+GRT R G
Sbjct: 448 QAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAG 507
Query: 444 NLGVATSFFNDTNRGLAR 497
G A +F D++R L +
Sbjct: 508 REGYAVTFVTDSDRSLLK 525
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 78.6 bits (185), Expect = 4e-15
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q +RE L FR G ILVAT VAARGLD+P+V VI+++LP++ E +VHR GRTG
Sbjct: 393 DISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTG 452
Query: 435 RMGNLGVATSFF-NDTNRGLARDLVDCSSRLNK 530
R G G A D R + + SR N+
Sbjct: 453 RAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNE 485
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q +RE L FR G ILVAT VAARGLD+P+V +I+++LP++ E +VHR GRTG
Sbjct: 381 DISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTG 440
Query: 435 RMGNLGVATSFFN-DTNRGL 491
R G G A ++ D +R +
Sbjct: 441 RAGKKGSAILIYSQDQSRAV 460
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q +RE L FR G+ LVAT VAARGLDI V+ +I + P +VE Y+HR GRTGR G
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAG 441
Query: 444 NLGVATSFFNDTNRGLAR 497
N GVA + ++ ++R
Sbjct: 442 NTGVAVTLYDSRKSSVSR 459
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D++Q R + L++F++G +L+AT VAARGLDI ++ V+N+D+ D++ +VHRIGRTG
Sbjct: 506 DKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTG 565
Query: 435 RMGNL-GVATSFFNDTNRGLARDLVD 509
R G+ GVA + A +LV+
Sbjct: 566 RAGDRDGVAYTLVTQREARFAGELVN 591
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 449
ERE+A+ +FR G+ +L+AT V ARG+D + VIN+D P Y+HRIGR+GR G
Sbjct: 418 ERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRS 477
Query: 450 GVATSFFNDTNRGLARDLVD 509
G A +F+ + + R++ +
Sbjct: 478 GEAITFYTEQDVPFLRNIAN 497
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/96 (38%), Positives = 54/96 (56%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q +R A F+T + +L++T VAARGLD P VR +I +D P + EYVHR+GRT R+G
Sbjct: 385 QEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIG 444
Query: 444 NLGVATSFFNDTNRGLARDLVDCSSRLNKTYLIGLL 551
G A F ++L + L + L+ +L
Sbjct: 445 EKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVL 480
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q ER + F+ G ILVAT + RG+DI V VIN+D+P + Y+HR+GR GR
Sbjct: 323 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
Query: 441 GNLGVATSF 467
G G+A +F
Sbjct: 383 GTKGLAITF 391
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q ER + F+ G ILVAT + RG+DI V VIN+D+P + Y+HR+GR GR
Sbjct: 240 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 299
Query: 441 GNLGVATSF 467
G G+A +F
Sbjct: 300 GTKGLAITF 308
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q ER + F+ G ILVAT + RG+DI V VIN+D+P + Y+HR+GR GR
Sbjct: 323 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382
Query: 441 GNLGVATSF 467
G G+A +F
Sbjct: 383 GTKGLAITF 391
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D +Q R+ + RFR +T +L+ T +AARG+DIP + +VIN+D P + +VHR+GR
Sbjct: 304 DMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAA 363
Query: 435 RMGNLGVATSFFNDTNRGLARDL 503
R G G A SF + DL
Sbjct: 364 RAGRTGCAYSFVTPEDMPYMLDL 386
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 68.1 bits (159), Expect = 6e-12
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 270 EREDALRRFR-TGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 446
ER + L FR TG + V T AARG+D+P+V HVI D S +++HRIGRT R G
Sbjct: 462 ERANILADFRETGG--VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQ 519
Query: 447 LGVATSFFNDTNRGL 491
G TS + + NR L
Sbjct: 520 YGTVTSLYTEANRDL 534
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/74 (43%), Positives = 42/74 (56%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV T + RG+DI V VINFD P + E Y+HR+GR+GR G
Sbjct: 404 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
Query: 444 NLGVATSFFNDTNR 485
+LG+A + +R
Sbjct: 464 HLGLAVNLITYEDR 477
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/74 (43%), Positives = 42/74 (56%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV T + RG+DI V VINFD P + E Y+HR+GR+GR G
Sbjct: 404 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
Query: 444 NLGVATSFFNDTNR 485
+LG+A + +R
Sbjct: 464 HLGLAVNLITYEDR 477
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/69 (43%), Positives = 44/69 (63%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
+Q+ R+ AL F + +L+ T VAARGLDIP + +V+ +D P D + ++HR+GRT RM
Sbjct: 304 DQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARM 363
Query: 441 GNLGVATSF 467
G A F
Sbjct: 364 ERQGRAIVF 372
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D N R +L R G +LV+T +AARG+D+P H+ NFDLP V +Y+HR GR G
Sbjct: 374 DMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAG 433
Query: 435 R 437
R
Sbjct: 434 R 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/61 (47%), Positives = 38/61 (62%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D N R +L R G +LV+T +AARG+D+P H+ NFDLP V +Y+HR GR G
Sbjct: 217 DMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAG 276
Query: 435 R 437
R
Sbjct: 277 R 277
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV T + RG+DI V VINFD P E Y+HR+GR+GR G
Sbjct: 397 QDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
Query: 444 NLGVATSFFNDTNR 485
+LG+A + +R
Sbjct: 457 HLGLAVNLVTYEDR 470
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV T + RG+DI V VINFD P E Y+HR+GR+GR G
Sbjct: 397 QDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
Query: 444 NLGVATSFFNDTNR 485
+LG+A + +R
Sbjct: 457 HLGLAVNLVTYEDR 470
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR G LV T + RG+DI V VINFD P E Y+HR+GR+GR G
Sbjct: 427 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 486
Query: 444 NLGVATSFFNDTNR 485
+LG+A + +R
Sbjct: 487 HLGLAVNLVTYEDR 500
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D + R L++F+ G+ +LV ++ARGLD+ V+N +LP+D Y HR GRTG
Sbjct: 440 DLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTG 499
Query: 435 RMGNLGVATS 464
R+G G +
Sbjct: 500 RLGRKGTVVT 509
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
+ QR R ++ RFR + IL+AT + ARG+DI +VR +I++ LP E YVHR GRT
Sbjct: 535 EMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTA 594
Query: 435 R 437
R
Sbjct: 595 R 595
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D Q R+ AL F + L+ T VAARGLDIP + +V+ +D P D + HR GRT
Sbjct: 311 DMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTA 370
Query: 435 RMGNLGVATSF 467
R+G G A F
Sbjct: 371 RLGRQGRAIVF 381
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +3
Query: 270 EREDALRRFRT--GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
+R + L++F+ G P LV T +AARGLD+ V HV+ FD P + +Y+HR GRT RMG
Sbjct: 408 QRVENLKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMG 466
Query: 444 NLGVATSFFNDTNRGLA 494
G TS + ++ LA
Sbjct: 467 AKGKVTSLVSRKDQMLA 483
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 294 FRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLG 452
FR ++ ILV + V+ARG+D P V V+ LPSD E+Y+HR+GRTGR G G
Sbjct: 384 FRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 436
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/59 (44%), Positives = 38/59 (64%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
+Q +R +F +T IL+ T VAARGLD PHV ++ +D P + +Y+HR+GRT R
Sbjct: 435 DQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTAR 493
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +3
Query: 294 FRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLG 452
FR + ILV + V+ARG+D P V V+ LPSD E+Y+HR+GRTGR G G
Sbjct: 686 FRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 738
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
NQ R L+ FR G +LVA+ RG+D+ V +VIN+D+P + ++HR GRT R
Sbjct: 363 NQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA 422
Query: 441 GNLG 452
G G
Sbjct: 423 GQAG 426
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R FR + ILV + V+ARG+D P V V+ LP D E+Y+HR+GRTGR G
Sbjct: 348 QSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKG 407
Query: 444 NLG 452
G
Sbjct: 408 KEG 410
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
Q R F+ ILV + V+ARG++ P V VI +PSD E+Y+HR+GRTGR G
Sbjct: 623 QLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREG 682
Query: 444 NLG 452
G
Sbjct: 683 KGG 685
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/59 (45%), Positives = 34/59 (57%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
+Q R F + IL+ T VAARGLDIP V +I +D P EY+HR+GRT R
Sbjct: 369 DQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTAR 427
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +3
Query: 294 FRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLG 452
F+ ILV + V+ARG++ P V VI +PSD E+Y+HR+GRTGR G G
Sbjct: 680 FKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 732
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Frame = +3
Query: 264 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPS-------DVEEYVHRI 422
+ +R+ ++ F+ T +L+AT V ARG D V V+N++LP+ D E Y+HR+
Sbjct: 376 ESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRV 435
Query: 423 GRTGRMGNLGVATSFFND 476
GR GR G G + D
Sbjct: 436 GRAGRFGRKGAVFNLLLD 453
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 LVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR-MGNLGVATSFFNDTNRGLA 494
LV T A+RG+D V HV+ FD P D EYV R+GRT R G A F GLA
Sbjct: 698 LVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLA 757
Query: 495 RDLVD 509
R +++
Sbjct: 758 RRIIE 762
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +3
Query: 312 PILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN 473
P L A RG+D V VINFD+P V Y+HRIGRTGR + G + S +
Sbjct: 388 PKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLIS 441
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 267 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 446
++R F + + ++VAT GLD V VI+F +P +EEYV IGR GR G
Sbjct: 523 KDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGR 582
Query: 447 LGVATSFF-NDT 479
L F+ NDT
Sbjct: 583 LSYCHLFYDNDT 594
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +3
Query: 237 GNIDPWDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVH 416
G+ + + + +D + +FR G +LVAT+VA GLDI V+ FDL V Y+
Sbjct: 700 GHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQ 759
Query: 417 RIGRTGRMGN 446
GR + G+
Sbjct: 760 SRGRARKPGS 769
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +3
Query: 258 RNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
++Q+ ++ L +FR G ++VAT++ GLDI V VI FD + R+GRTGR
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
Query: 438 MGN 446
N
Sbjct: 571 KNN 573
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPH-VRHVINFDLPSDVEEYVHRIGRTGR 437
+Q +R +F Q+ +L T V ARGLD V V+ D P DV Y+HR+GRT R
Sbjct: 353 SQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTAR 411
Query: 438 MGNLGVATSFFNDTNRGLARDL 503
G + F + + L
Sbjct: 412 FYTQGKSLLFLTPSEEKMIEKL 433
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/83 (34%), Positives = 42/83 (50%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 440
++R E L+RF++ + +LVAT V GLDI VI +DLP V ++ GR RM
Sbjct: 556 SRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGR-ARM 614
Query: 441 GNLGVATSFFNDTNRGLARDLVD 509
A F D+ DL++
Sbjct: 615 PQSEYA--FLVDSGNEKEMDLIE 635
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 267 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 443
++R D R+++TG+ I+ AT G+D VR VI+ L VE Y GR GR G
Sbjct: 465 KQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDG 523
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
++ ++++ + + FR G I+VAT++ GLD+ VI FD S++ ++ GR
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR-A 487
Query: 435 RMGNLGVATSFFNDTNRGLARDLVDC 512
RM N L LV C
Sbjct: 488 RMQNSDYLMMVERMREESLDHSLVPC 513
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGL 350
D+ Q ER+ L F++G++PI+ AT VAARGL
Sbjct: 443 DKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
N + R L + + + I+VAT G+D VR V +F++P +E + GR GR
Sbjct: 198 NSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGR 256
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 437
N + R L + + + I+VAT G+D VR V +F++P +E + GR GR
Sbjct: 291 NSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGR 349
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRI-GRTGR 437
++E+AL +FR+G+T IL++T V G+D+P ++ + +H++ GR GR
Sbjct: 810 DKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 866
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 255 DRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTG 434
D + R L++F+ +LV + GL+ +++ +LP+D Y HR GR
Sbjct: 648 DLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAGRMR 707
Query: 435 RMG 443
R G
Sbjct: 708 RPG 710
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 294 FRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 449
F + ++VAT G+D +VR +I++ +E Y GR GR G L
Sbjct: 543 FHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGEL 594
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 261 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHV 374
+Q+ R+ AL F + +L+ T VAARGLDIP + ++
Sbjct: 277 DQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 731 MSPRHSQSRNRYRQLLQNVPPDEVVYGSPLSRSRYRRNEHSQN-ESQ 594
M R SQS NR R N P+EV G P+ R N ESQ
Sbjct: 485 MQKRQSQSTNRSRSEKFNPHPEEVASGFPIDPPRPSSQAFEPNRESQ 531
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 435 RMGNLGVAT--SFFNDTNRGLARDLVDCSSRLNKTYLI 542
RM L V T + F D+ RG R++VDC +L K L+
Sbjct: 801 RMATLAVFTLANTFGDSIRGGWRNIVDCLLKLRKLQLL 838
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 70 CLGRRNGQAFLFIGFTKCIKLATTCTSRRGSTYTC 174
C+GR+ G AF+ G T C + RGS C
Sbjct: 169 CMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLC 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,040
Number of Sequences: 28952
Number of extensions: 248022
Number of successful extensions: 766
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -