Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0434
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    53   3e-08
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    51   1e-07
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    28   1.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    27   1.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.5  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   3.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   5.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   5.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   5.8  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   7.6  
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    25   7.6  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   7.6  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    25   7.6  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   7.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.6  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 20/56 (35%), Positives = 41/56 (73%)
 Frame = +3

Query: 255 LKLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMD 422
           +K+LLLG G+SGK+T ++QMR+++  G+S   ++ +  ++++NI  ++  ++ AMD
Sbjct: 75  IKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMD 130


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/75 (29%), Positives = 48/75 (64%)
 Frame = +3

Query: 189 TKKDQSRNREATQKGQTRCQKSLKLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGFIK 368
           +KK  S+  +  +    + +K  K+LLLG  +SGKST  +Q++I++ +G+S E+   FI 
Sbjct: 13  SKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIP 72

Query: 369 LVYQNIFMAMQSMIR 413
           ++ +N+  + +++++
Sbjct: 73  VIRRNLLESAKTLVK 87


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 157 MECCMSEEAKEQKRINQEIERQLRKDKRDARRASNCSYLE 276
           M C   +   +  R+ + +ERQ R D+    +   C YL+
Sbjct: 234 MSCRRPKLVPQATRLTEVLERQQRSDRERRLKQKQCDYLQ 273


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 24/88 (27%), Positives = 36/88 (40%)
 Frame = +3

Query: 147 LKNHGVLHVRRSKGTKKDQSRNREATQKGQTRCQKSLKLLLLGTGESGKSTFIRQMRIIH 326
           LKN G     R++  K+  S N     + +       K+ LLG G+ GK   +RQ     
Sbjct: 120 LKNPGNYIFGRTEYGKRTYSGNSTKISRVEVTPHSFEKIRLLGQGDVGKVYLVRQKSNHR 179

Query: 327 GSGYSDEDKRGFIKLVYQNIFMAMQSMI 410
                  +KR  IK    N  +A Q ++
Sbjct: 180 LFAMKILNKREMIKRHKVNRVLAEQEIL 207


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +1

Query: 175 EEAKEQKRINQEIERQLRKDKRDARRASNCSYLELESRANLLSSGR*ESSTARVIATKTS 354
           E AKE  + + + +   +K K++A+RAS+    +   +    S  + ESS+     + +S
Sbjct: 35  EAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSS 94

Query: 355 AASSNSFTRTSS 390
            + S+S    SS
Sbjct: 95  ESESSSSESESS 106


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +1

Query: 253 ASNCSYLELESRANLLSSGR*ESSTARVIATKTSAASSNSFTRTSSW 393
           ASN S    ++ +++ +SG   SST+ +++T  S +++ S   TSS+
Sbjct: 591 ASNSSDYYSQTVSSITASGT-TSSTSEIVSTPASNSNTGSLNGTSSF 636


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 252 SLKLLLLGTGESGKSTFIRQ 311
           + KL+L+G G +GK+TF+++
Sbjct: 9   TFKLVLVGDGGTGKTTFVKR 28


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 262 CSYLELESRANLLSSGR*ESSTARVIATKTSAASS 366
           C Y ++ES A  + SG+ E S    I + TS ASS
Sbjct: 28  CGY-DVESAAEFIFSGQLEKSRLVPIMSSTSIASS 61


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 216  EATQKGQTRCQKSLKLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGFIKL 371
            EAT   Q   + SL+ + L    SGK+T ++ M I  GS  +   + G+ +L
Sbjct: 917  EATYIKQDMTEFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIVENGWDRL 968


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 261 LLLLGTGESGKSTFIRQMRII 323
           L++ G    GKST+IRQ+ +I
Sbjct: 717 LIITGPNMGGKSTYIRQVGVI 737


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 196 FFVPLLLLTCSTP*FFRAEGR-NLSSRAEPCPF 101
           +F+P+LL+  + P FF      ++ +R  PCP+
Sbjct: 6   YFIPMLLVANAAPYFFYPIFMLSMIARKYPCPY 38


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 117 RSPVLSAGLSTEAHHSRIYIHRARSNVPLQIIALTTII 4
           ++ V   GL+   HH+R+ I +    V  QI+ + + +
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 141 SALKNHGVLHVRRSKGTKKDQSRNREATQKGQTRCQKSLKLL 266
           S L NH +   +R    KKD + N  A ++ +T C+++ + L
Sbjct: 233 SRLVNHFIQEFKRKN--KKDITGNARAVRRLRTACERAKRTL 272


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 117 RSPVLSAGLSTEAHHSRIYIHRARSNVPLQIIALTTII 4
           ++ V   GL+   HH+R+ I +    V  QI+ + + +
Sbjct: 110 QTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFV 147


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 184 KEQKRINQEIERQLRKDKRD 243
           KEQK+I ++   + RK+K+D
Sbjct: 300 KEQKKIRRQTRAEARKEKQD 319


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 264 LLLGTGESGKSTFIRQMRII 323
           L+ G   +GKSTF+RQ  II
Sbjct: 744 LITGPNMAGKSTFLRQNAII 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,236
Number of Sequences: 5004
Number of extensions: 48737
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)