Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0434
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    34   0.067
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    31   0.48 
02_05_0097 + 25796725-25796857,25797366-25797495,25798273-257988...    31   0.83 
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81...    29   3.4  
05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221           29   3.4  
03_05_0182 - 21679813-21680127                                         29   3.4  
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    28   5.9  
05_06_0172 + 26138238-26138474,26138712-26139854                       28   5.9  
01_05_0673 + 24183512-24183514,24183625-24183694,24184203-241842...    27   7.7  

>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 258 KLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGFIKLVYQNIF 389
           KLLLLG   +G ST  +Q + ++G+ ++ E+      ++  N+F
Sbjct: 444 KLLLLGPDGAGTSTIFKQAKYLYGTRFTQEELENIKLIIQSNMF 487


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 258 KLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGFIKLVYQNIF 389
           KLL+LG+  +G ST  +Q ++++ + ++ E+      ++  N+F
Sbjct: 456 KLLILGSPGAGTSTIFKQAKLLYDTRFTQEELDSIKLMIQSNMF 499


>02_05_0097 +
           25796725-25796857,25797366-25797495,25798273-25798842,
           25799604-25799650,25799908-25799976,25801437-25801699
          Length = 403

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 271 LELESRANLLSSGR*ESSTARVIATKTSAASSNSFT 378
           LE E+R +LLSS    ++T    AT T++ASS+S T
Sbjct: 146 LEAEARLSLLSSSGAAATTTITAATTTTSASSSSTT 181


>06_01_0098 +
           818374-818427,818537-818627,818753-818868,818962-819087,
           819175-819357
          Length = 189

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 243 CQKSLKLLLLGTGESGKSTFIRQMRIIHGSGYSDEDKRGF--IKLVYQNI 386
           C K +K+L+LG   +GK+T + ++ I  G   S     GF   K+ Y+N+
Sbjct: 13  CTKEMKVLMLGLDAAGKTTILYRLHI--GEVLSSIPTIGFNVEKVEYKNV 60


>05_01_0607 - 5415380-5416289,5416596-5416964,5417866-5418221
          Length = 544

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 324 HGSGYSDEDKRGFIKLVYQNIFMAMQSMIRAMDLLTIQYGNRPM 455
           HG G    D + F+K V Q    A+QS +R    L +Q G +P+
Sbjct: 116 HGYGVQPFDNQSFLKYVVQGSAPALQSTLRLYRRL-LQLGIKPV 158


>03_05_0182 - 21679813-21680127
          Length = 104

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 131 SVLSRGALSFRQAFQPRHTTPEYIS 57
           S  S G   F+  FQP+HT P Y++
Sbjct: 7   SAPSTGFTRFKARFQPQHTKPRYVT 31


>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 252 SLKLLLLGTGESGKSTFIRQ 311
           S KL+L+G G +GK+TF+++
Sbjct: 441 SFKLILVGDGGTGKTTFVKR 460


>05_06_0172 + 26138238-26138474,26138712-26139854
          Length = 459

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 392 GDAEYDTRHGPTNNTIWE 445
           G +E +  HGPTN+  WE
Sbjct: 384 GTSETEASHGPTNDVFWE 401


>01_05_0673 +
           24183512-24183514,24183625-24183694,24184203-24184259,
           24184348-24184465,24185044-24185133,24185209-24185388,
           24185474-24185551,24185642-24185711
          Length = 221

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 234 QTRCQKSLKLLLLGTGESGKSTFIRQ 311
           QT    S KL+++G G +GK+TF+++
Sbjct: 7   QTVDYPSFKLVIVGDGGTGKTTFVKR 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,457
Number of Sequences: 37544
Number of extensions: 347643
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)