Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0433
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    31   0.18 
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   6.8  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 203 YFKILCINIYLFILHNPYNNTLQNTNKNYILESK 304
           +  ILC+  Y  +L+NP N  LQ+  K Y   S+
Sbjct: 269 FLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSE 302


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 RLMFRYFKILCINIYLFILHNPYNNTLQNTNKNYILESK 304
           +++F   K++C+ I+LF L    N TLQ   + Y+  S+
Sbjct: 123 KIIFPAQKVICLYIFLFAL----NQTLQECIEEYVFSSE 157


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 RLMFRYFKILCINIYLFILHNPYNNTLQNTNKNYILESK 304
           +++F   K++C+ I+LF L    N TLQ   + Y+  S+
Sbjct: 123 KIIFPAQKVICLYIFLFAL----NQTLQECIEEYVFSSE 157


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 RLMFRYFKILCINIYLFILHNPYNNTLQNTNKNYILESK 304
           +++F   K++C+ I+LF L    N TLQ   + Y+  S+
Sbjct: 95  KIIFPAQKVICLYIFLFAL----NQTLQECIEEYVFSSE 129


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 RLMFRYFKILCINIYLFILHNPYNNTLQNTNKNYILESK 304
           +++F   K++C+ I+LF L    N TLQ   + Y+  S+
Sbjct: 123 KIIFPAQKVICLYIFLFAL----NQTLQECIEEYVFSSE 157


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 377 FT*FT*QKDY*K*KQLNHDSSTYNFIYYVKACLRNHKQFNNLSSLENLTI 526
           F  F   K++ + +   HDS + NF   +  C  N K+ NNL + + + +
Sbjct: 149 FLTFKGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNNLVTEDRVNL 198


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 745 PAWADITDLPNSAVKQ 698
           P WAD++DLP  +V++
Sbjct: 603 PNWADVSDLPPDSVRE 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,103
Number of Sequences: 5004
Number of extensions: 54080
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)