Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0433
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02630.1 68418.m00199 expressed protein                             28   6.0  
At3g20840.1 68416.m02635 ovule development protein, putative sim...    28   7.9  

>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 210 KFYVLIFIYLFYTIHITILYKTQTKIIY 293
           KFYVL+  YLF+T  + ++ K +    Y
Sbjct: 355 KFYVLVIGYLFFTRIVVVVMKMKADFTY 382


>At3g20840.1 68416.m02635 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 529

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 428 HDSSTYNFIYYVKACLRNHKQFNN 499
           HDSS++N   Y++  L  H+Q NN
Sbjct: 394 HDSSSFNHHSYIQTQLHLHQQTNN 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,904,809
Number of Sequences: 28952
Number of extensions: 253786
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)