Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0432
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.86 
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   6.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.0  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 592 AKRIFQFYASILFYCVISLKS*MYILKYNT 681
           A   FQFYA  + Y +I     M + KY T
Sbjct: 145 AVEFFQFYAQFIVYFLIYAVLEMLLQKYKT 174


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 546 PKGHYRERCNH 578
           PKG Y+ R NH
Sbjct: 106 PKGEYKSRYNH 116


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 412 T*LYNNPSDKIKMM*KVNVKFFDCNKDSLNIVKI 513
           T +Y    D+IK   K+ +KF D   D+    K+
Sbjct: 548 TEIYKGLIDRIKSREKLTMKFHDGEVDASYFCKL 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,482
Number of Sequences: 336
Number of extensions: 3492
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)