Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0432
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   6.7  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    26   6.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   6.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.8  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 66  SDHSTVYWYVQ*TAYTACERMFRNWLRCNCDSLIYYIFR 182
           SD +++  ++Q  A + C R+FR +   +C S++ Y+ +
Sbjct: 725 SDGTSIAHWLQGLA-SFCGRVFRRYSSLDCTSIVEYVIK 762


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 724 ISSYNFNNLQVLDHRYYILKYTFKILMKLHNK-TRSKHKIEIFAWRCKLLWLH 569
           + +YNFN  +V DHR  +  +     M+   K      KI I  W  + L LH
Sbjct: 342 LRTYNFNQNRVTDHRIGLSMHDLSTFMQGEEKFDEFLEKIRI--WNREQLLLH 392


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 49  VPIWSCPTTQLF--IGTSNKRLI 111
           V IWSC T +LF  +G+ N  LI
Sbjct: 499 VCIWSCKTAKLFKELGSDNSELI 521


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 NNPSDKIKMM*KVNVKFFD 480
           NNP+D +K + K+ +KF D
Sbjct: 632 NNPADTVKALMKLTLKFVD 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,104
Number of Sequences: 5004
Number of extensions: 57871
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)