Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0432
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_12359| Best HMM Match : zf-TRAF (HMM E-Value=9.3)                   30   1.8  
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  

>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 518 LKYIGIMCNT*RPLPRAM*PQELATPSEYFNFMLR 622
           LKY+ ++CN    +PR +  Q LA   +YFN +++
Sbjct: 140 LKYLYLLCNPIENIPRDVYIQSLAVIRQYFNVVVK 174


>SB_12359| Best HMM Match : zf-TRAF (HMM E-Value=9.3)
          Length = 90

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 667 LKYNTCDQELVNC*NCKTKLLYYCKIE 747
           LK  +C+Q L NC  CKT L ++ K+E
Sbjct: 22  LKGTSCEQALTNC-ECKTYLFFHKKLE 47


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 724 ISSYNFNNLQVLDHRYYILKYTFKILMKLHNKT-RSKHKIEI 602
           +++Y+   L  L H  YI K  F +L +L N+T +  H + I
Sbjct: 1   MATYDIGTLTRLSHNVYIQKAVFFLLQELPNRTAKMYHSLSI 42


>SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 353 ISDKLSGPSLDIFFRKEGSLETFTISPGQGSK 258
           I D LSG  L +  R +  L+T+ I P +GS+
Sbjct: 174 IKDALSGKGLQVDNRPQNYLQTYRIHPYKGSR 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,077,188
Number of Sequences: 59808
Number of extensions: 396214
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)