Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0432
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical
           protein F33E2.3 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 736 NNIAISSYNFNNLQVLDHRYYILK-YTFKILMKLHNKTRSKHKIEIFAWRCKLLWLHRSR 560
           + +  + +N+N L  L    Y+++  T +I+  + N+ RS + IEI     +L WL R R
Sbjct: 306 DRVQATYFNYNGLTYLAGICYLMRSITDEIICDI-NRPRSFNHIEICRKAFELTWLERRR 364


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 41  DRMSLSGLVRPLNCLLVRPINGLYC 115
           DRM +   V+P +C + RP+ G  C
Sbjct: 583 DRMQIKDEVQPFSCKVPRPLKGYIC 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,994,424
Number of Sequences: 27780
Number of extensions: 322266
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)