Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0431
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.2  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   5.6  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   9.8  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 40  SILIVCIA--ISPGRRPLADPFYILTF 114
           SI+ +C A  +SP  RP A+PF  L++
Sbjct: 75  SIIAICFACLLSPSLRPYAEPFIFLSY 101


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 513 LNDRKCRRKTIFGDELQRSDAHNNTHNVSYIYLLPAK 403
           LN+ KC    I+G  L R       H+ S  Y L AK
Sbjct: 864 LNESKCSHSPIYGSNLIRLAEKLPKHSTSIDYTLYAK 900


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 543 IICN*CGHQKSSSDQ*QITRDQRMDPLRYNNNCSLIII 656
           ++C+  G    + D   ++RD ++ P   N +CSL+++
Sbjct: 111 VVCSAFGSSVIAGDLEDVSRDLKVGPEVANLSCSLMVV 148


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 621 GDPYVDPGLFVI 586
           G+PYVDP LF I
Sbjct: 856 GNPYVDPSLFTI 867


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,819
Number of Sequences: 5004
Number of extensions: 42752
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)