Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0430
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.61 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.2  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   4.3  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    26   4.3  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   4.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   7.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   9.9  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.9  
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    25   9.9  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 329 KESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 454
           K SPP  N+  A+KPVP+  N   S +L   +SP  N K ++
Sbjct: 188 KNSPP--NSRTARKPVPRRAN-SASHNLGSTKSPNGNAKESL 226



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 197 LCRRNTDQEKTK*PKCSSDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPV 376
           L R+N+ Q K+     SS  E     T         +++     ++SPP   +TA   P+
Sbjct: 48  LSRKNSSQIKSPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPATPI 107

Query: 377 P 379
           P
Sbjct: 108 P 108


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 296  TSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPS 403
            TSA S+   I K S P  NN +    VP    P P+
Sbjct: 1068 TSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPPA 1103


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 245 SSDFENAPRSTVRRYWRTSADSNTKII--QKESPPANNNTAAKKPVPKAENPQPSV 406
           S+D ENA R  +  Y   S + NT      + SP  NNN    K  P + +P   V
Sbjct: 566 SADKENAEREEIPSYSDKSENFNTTSFTNHERSPNGNNNLKFSKD-PNSSSPSRHV 620


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 248 SDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 394
           S+  ++ RST R   R++  S +      + P  NNT    P P  E P
Sbjct: 202 SNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPAPPVELP 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 382  FWYWFFGCSIVVGRWRLFL--NYFSVGIGTGAP--ITTNSAARGI 260
            F  WFFGC+++ G  +LFL  N   + + T A   ITT+S A  +
Sbjct: 1950 FMCWFFGCTLISGP-QLFLKNNLKPLLLATHASHLITTSSIAASL 1993


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 299 SADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS 415
           S+DS++ +  +E+   + +  A K +PK   P PS DL+
Sbjct: 156 SSDSSSDV-DEETLIVSKSKKAHKDIPKFSAPPPSADLN 193


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 266 PRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 430
           PR+ V +Y++   ++  K I ++ P  +NNT        + +PQ       +Q+P
Sbjct: 448 PRTGVSKYFKLQKNTE-KEIDEQVPSQSNNTTPTSAKSDSASPQNWFSSFSYQTP 501


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 439 ILGRRLKKG*VNRRLGILSFWYWFFGCSIVVGRWRLFL 326
           IL RR++   +   L ILSF  W F   +V   WRLF+
Sbjct: 2   ILNRRIQV--ILPTLLILSFIIWIFHSVMVDKDWRLFM 37


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 QKESPPANNNTAAKKPVPKAENPQPSVDL-SFFQSPPQNLKRTI 454
           ++ + P    ++ + P P AEN QPSV      +SP  +L + I
Sbjct: 321 KEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVI 364


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 377 PKAENPQPSVDLSFFQSPPQNL 442
           P+ + PQP++ L+ + +PP++L
Sbjct: 500 PEGDLPQPNIYLTRYTNPPKSL 521


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 317 KIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 457
           K+    + P N N   K P  +  N  P +  ++  SP  +++   E
Sbjct: 174 KLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSIQEAEE 220


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 185 CYAALCRRNTDQEKTK*PKCSSD 253
           CY+  C RN+  E T  P  SSD
Sbjct: 419 CYSCRCARNSSLEFTSLPGQSSD 441


>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 564 QSFQWL*SALVVEPLPQPH 508
           QS++W+ S+ +V+ LP+ H
Sbjct: 52  QSYKWIVSSTLVQKLPEDH 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,362
Number of Sequences: 5004
Number of extensions: 60397
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)