Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0430
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.16
09_06_0095 + 20833313-20835073 33 0.27
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 31 1.1
08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890 30 1.5
04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542 30 1.9
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 29 2.5
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 29 4.4
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380 28 5.9
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 5.9
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 314 TKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVI 463
TK IQK P T A+ P+P+A P+ S+ ++ Q+P L + I
Sbjct: 147 TKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAI 196
>09_06_0095 + 20833313-20835073
Length = 586
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 101 VRVMFCFALIRAETWTRNLTIMIWRA--VVCYAALCRRNTDQEKTK*PKCSSDFENAP 268
+ +M F+ ++L IM W V+C+AA+ + + KT P D EN P
Sbjct: 527 IGIMILFSGFLVPKMPKSLKIMCWATSIVICFAAVLSYDNESSKTTAPTEMHDLENPP 584
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 554 NGYSRLWW*SHFHNLTSSLDSRITCFQFHARLPQ 453
N Y R+W+ + H+ S L + + C ++ RLP+
Sbjct: 260 NDYGRIWF--NIHDFLSDLKNTLLCLEYEVRLPK 291
>08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890
Length = 468
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 340 WRLFLNYFSVGIGTGAPITTNSAARGI 260
W LF+ YF +G+GTG + N A G+
Sbjct: 250 WLLFVGYF-IGVGTGVTVLNNLAQIGV 275
>04_03_0009 + 9313227-9313533,9314182-9314405,9315336-9315542
Length = 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 284 RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP 394
RYW+T S+T + E P + A P ENP
Sbjct: 44 RYWKTPVKSSTPAKKLEEPAQRKPSPAPSPPETVENP 80
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 284 RYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 457
RYWRT S + E P ++A KP + N S ++ + + K IE
Sbjct: 529 RYWRTPVKSPVPAKKLEQPAQKKPSSAPKPKKERTNMDASKRAAYVKKIHEKTKEEIE 586
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 28.7 bits (61), Expect = 4.4
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 2/132 (1%)
Frame = +2
Query: 113 FCFALIRAETWTRNLTIMIWRAVVCYAALCRRNTDQEKTK*PKCSSDFENAPRSTVRRYW 292
F +IR +TR + R +V A +RN + T PK ++ APR TV
Sbjct: 25 FAQPIIRCRRFTRTRLL---RCLVASADYSKRNPRRASTPKPKGAASRTYAPRPTVESSM 81
Query: 293 RTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPS--VDLSFFQSPPQNLKRTIEVIE 466
+ S T + +N + + + N + S VD S S L+ + E
Sbjct: 82 KKIGQSGT---DEGDLGTSNGKLSSEATEQTSNVEESSEVDFSGNVSSSVFLEGMDDAFE 138
Query: 467 HEIENR*SWNQA 502
E E NQ+
Sbjct: 139 AETEEEVEQNQS 150
>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
Length = 411
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 521 FHNLTSSLDSRITCFQFHARLPQWFFLN-FGAEIEKRIS 408
FH TS LD +TC F + W +N FG+ IE ++
Sbjct: 224 FHFTTSLLDLHLTCCYFQSVQLLWETMNIFGSVIESLVN 262
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 335 SPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTI 454
SPP A K+PVP P+ + S + PP RT+
Sbjct: 101 SPPPLGEVAPKQPVPAKLFDAPAAEASSSEPPPPPPPRTL 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,524,793
Number of Sequences: 37544
Number of extensions: 399053
Number of successful extensions: 1160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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