Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0430
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4633| Best HMM Match : IncA (HMM E-Value=0.79) 30 2.0
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 2.6
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59) 29 2.6
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10) 29 3.4
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 29 4.5
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 28 6.0
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11154| Best HMM Match : Flagellin_IN (HMM E-Value=2.2) 28 6.0
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 28 7.9
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_4633| Best HMM Match : IncA (HMM E-Value=0.79)
Length = 413
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 245 SSDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQ 424
SS+F ++ R +R D K ++ PPAN + K +A+ P P +++ +Q
Sbjct: 190 SSEFVSSIRIWIRDDRGRRVDFKDKPVRLCPPPANAYRSGKHRRRRAKFPTPDNEITHYQ 249
Query: 425 SPPQNLKRTIEV 460
+ KR V
Sbjct: 250 QVRKKYKRAFAV 261
>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 199 MQTKHRPRKNEITKMQLRFRKCPAQHCSSLLAHQCRFQH*NNSERVATCQQQYCSQKTST 378
MQ+ + ++ + K +++ RKC Q C +C+ Q + C+ Q C K T
Sbjct: 1 MQSTNSRKEKQTRKCKVQTRKCKVQTC------KCKAQTCKGKVQTCKCKAQTCKGKVQT 54
Query: 379 K 381
+
Sbjct: 55 R 55
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 196 IMQTKHRPRKNEITKMQLRFRKCPAQHC 279
++Q HRP + + + LR R PA+HC
Sbjct: 869 VLQLVHRPSVSSVLQSLLRKRLLPAEHC 896
>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 199 MQTKHRPRKNEITKMQLRFRKCPAQHCSSLLAHQCRFQH*NNSERVATCQQQYCSQKTST 378
MQ+ + ++ + K +++ RKC Q C +C+ Q + C+ Q C K T
Sbjct: 1 MQSTNSRKEKQTRKCKVQTRKCKVQTC------KCKAQTCKGKVQTCKCKAQTCKGKVQT 54
Query: 379 K 381
+
Sbjct: 55 R 55
>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
Length = 673
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 176 AVVCYAALCRRNTDQEKTK*PKCSSDFENAPRSTVR 283
AVV L RRNTD E+ + P SS+ E++P +T R
Sbjct: 293 AVVKAVLLLRRNTDSEEPRVP--SSNAESSPVTTTR 326
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 305 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD--LSFFQSPPQNLKRTIEVIEHEIE 478
++ T + E+P + P+ +AE+P V+ + ++P + ++ T+E +E +E
Sbjct: 2 EARTPAEETEAPVEEAEALGETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPME 61
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 332 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 436
ESPP++ + P + P+PS S +PPQ
Sbjct: 737 ESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQ 771
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 320 IIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 436
++ K SPPA NT+ +K V E+ + + ++ Q PQ
Sbjct: 28 LLPKRSPPAIENTSPQKRVRLCEHDRNFIHVNLIQILPQ 66
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 305 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS-----FFQSPPQNLKRTIEVIEH 469
+++ +++ +S +N P+ P PSVD+S F +PPQ+L + H
Sbjct: 1397 NTHPALVRADSSEEPSNAPKHSPLGSRHQPPPSVDMSQPPPPAFAAPPQHLPHLGGAVTH 1456
>SB_11154| Best HMM Match : Flagellin_IN (HMM E-Value=2.2)
Length = 311
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 245 SSDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQ 424
SS+F ++ R +R D K ++ PPAN + K +A+ P P +++ ++
Sbjct: 168 SSEFVSSIRIWIRDDRGRRVDFKDKPVRLCPPPANAYRSGKHRRRRAKFPTPDNEITHYR 227
Query: 425 SPPQNLKRTIEV 460
+ KR V
Sbjct: 228 QVRKKYKRAFAV 239
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 27.9 bits (59), Expect = 7.9
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +2
Query: 185 CYAALCRRNTDQEKTK*PKCSSDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAA 364
C+A C+R+ + + + +CS+D ++A RS + R K Q+ S N
Sbjct: 442 CHA--CQRSLLEFEARQEQCSADIDSARRSIEHKIQRL----EKKFDQQFSSTEKNMDKN 495
Query: 365 KKPVPKAENPQPSV-DLS-FFQSPPQNLK-RTIEV 460
+PK E Q V DLS FQ +NL+ RT E+
Sbjct: 496 DSSLPKKEIFQQIVTDLSDEFQKVTRNLEVRTSEM 530
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 245 SSDFENAPRSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQ 424
SS+F ++ R +R D K ++ PPAN + K +A+ P P +++ ++
Sbjct: 394 SSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPANAYRSGKHRRRRAKFPTPDNEITHYR 453
Query: 425 SPPQNLKRTIEV 460
+ KR V
Sbjct: 454 QVRKKYKRAFAV 465
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 NTDQEKTK*PKCSSDFENAPRSTVRRYWRTSA-DSNTKIIQKESPPANNNTAAKKPVPKA 385
N E T+ P+ + + NA T Y T A D ++ + +PP+ A P
Sbjct: 761 NAPVETTQSPETTVPY-NAEMHTTDSYQTTEANDRQSQTTEANTPPSQTTEAYTPPAQTT 819
Query: 386 ENPQPSVDLSFFQSPP 433
E P + +PP
Sbjct: 820 EANTPPAQTTEANTPP 835
>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 269 RSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLK 445
R T R+ S++ + + SPP +++ A+KP ++ PS ++S S P++ K
Sbjct: 182 RDTPRQAPAAKTHSSSTVPRSGSPPVSSSRPAQKPT--SQTALPSTEISGTGSLPKSTK 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,833
Number of Sequences: 59808
Number of extensions: 442177
Number of successful extensions: 1194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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